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Detailed information on CNT3031526


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 4e-157

BLAST vs NONCODE:
NONTPRT002153, E-value = 2e-84

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30608664Theobroma cacaoGossypium raimondii85.0482.989.03921forward
CNT30120599Theobroma cacaoCitrus clementina84.1291.3783.97911forward
CNT30111771Theobroma cacaoFicus carica81.3570.7182.29881forward
CNT3066362Theobroma cacaoSelaginella moellendorffii84.2192.4982.79912forward

Expression of CNT3031526

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MSLCWSGGIPSLSWILALTLSMVSELSTSRVMVLPVRVFTKICIF*

>peptide 2 (45 aa)
QISNIKEKEKKALPYYDSILNLKQRQNLSFRTITAHHGDEGQGGG*

>peptide 3 (61 aa)
MSLCWSGGIPSLSWILALTLSIVSELSTSRVMVLPVKVLTKICIPPRRRRTRWRVDSFWML*

Sequence

>CNT3031526
CCCAGATATCAAACATTAAAGAAAAAGAAAAAAAGGCACTTCCTTATTATGACAGTATCTTAAATTTAAAACAACGACAAAACCTTTCCTTTAGAACAAT
CACTGCCCACCACGGAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGAATGTTATAATCAGCTAAAGTCCTCCCATCCTCCAATTGCTTCCCGGCAA
AGATAAGCCTTTGCTGATCTGGGGGGATTCCTTCCTTATCCTGAATCTTTGCCTTGACATTATCGATTGTATCCGAACTTTCCACCTCCAAGGTGATTGT
TTTTCCAGTCAAGGTCTTGACAAAAATCTGCATTCCTCCACGAAGCCTCAAAACAAGATGAAGGGTTGATTCCTTTTGTATGTTGTAATCAGCCAAGGTC
CTCCCGTCCTCAAGCTGCTTCCCAGCGAAGATCAATCGTTGTTGGTCTGGTGGGATCCCTTCCTTATCTTGGATCTTGGCCTTAACGTTATCAATCGTGT
CCGAGCTCTCGACCTCCAGGGTTATAGTCTTTCCTGTCAAGTTTTGACAAAGATTTGCATACCGCCACGAAGACGGAGGACCAGGTGGAGAGTTGACTCC
TTCTGGATGTTATAATCCGCCAAGGTACGACCGTCTTCGAGCTGTTTCCCGGCGAAGATGAGCCTTTGCTGGTCGGGTGGGATCCCTTCCTTGTCTTGGA
TCTTGGCCTTGACGTTGTCGATCGTGTCGGAACTCTCCACTTCGAGGGTGATGGTTTTACCGGTCAAGGTTTTGACGAAGATCTGCATACCGCCACGAAG
ACGGAGGACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCCAAGGTACGGCCGTCTTCGAGCTGTTTGCCAGCGAAGATGAGCCTTTGCTGG
TCGGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCCTTAACGTTGTCGATGGTGTCGGAACTCTCGACCTCGAGAGTTATGGTCTTGCCGGTCAGGGTTT
TCACGAAGATCTGCATCTTCTAAAAGGCTATGAGAATAATCTGAGGAGATGATTTGAGAAAGATTTTGATTTGCTCTGTTTGG