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Detailed information on CNT30315238


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LRR5|DRL21_ARATH, E-value = 1e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30514366Corylus avellanaJuglans regia8.5331.2584.4490reverse complement

Expression of CNT30315238

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MRNCSCVLEGDIICWLNNAGESERPQESYFLERFACGGDCLSRPGPSSQVAPRAFYLLSTASSKSHSSLVCSQSSPRCESSWMTI*

>peptide 2 (95 aa)
GLLPPNLTALQIKNFPCLKSLDKSGFQHLASLEELRIDNCPMLKYMPEEGLPASISVLLINSCPLLKKQLHKKKGKEWFKIAHVHLIMIDDELIE*

Sequence

>CNT30315238
GGGATTGCTGCCCCCGAATTTGACTGCTCTTCAAATAAAGAATTTTCCATGTTTAAAATCTTTGGATAAAAGTGGGTTTCAACACCTCGCCTCTCTTGAA
GAATTGCGGATCGATAATTGTCCTATGCTCAAGTACATGCCAGAAGAGGGGTTGCCTGCCTCCATTTCTGTTTTACTTATCAACAGTTGTCCTTTGCTAA
AGAAACAACTTCACAAGAAAAAAGGAAAAGAATGGTTCAAGATTGCTCATGTCCACCTAATAATGATTGATGATGAATTGATTGAATGAGCTAAATGTCT
AGCAAGAATCTCCACTTAGAATTTAGAAGATCTAAGCGCTCGATTATGACTTGACAAAGCAGATGTAGGCATATAGAATCTGATGCCCTGCTTCTCACAT
CATCTAATGCAATTGCCAAATCAAGATTGCCGAAATTTTGTCCTTTTTTTTTCTTCATAAGTGTGGGATCTGACCTACCATTCAGTGTCTTTTCTTGGAA
AAGGGGGCCTACTATCCAACCCGCACTGCCCCAACTGAAGTTATTGCTGTTTCTTATGCCTTCAATAATCAAATTTTTGAGATGAGAAATTGCAGCTGTG
TATTAGAGGGTGATATTATCTGTTGGCTAAATAATGCAGGTGAAAGTGAAAGGCCTCAAGAAAGTTATTTTTTAGAGAGATTTGCATGTGGTGGTGACTG
TCTTTCTCGACCAGGACCTTCCTCTCAAGTGGCACCTAGAGCCTTTTATCTCTTAAGCACGGCTTCTTCTAAATCACATTCTAGCTTGGTATGTTCGCAA
AGTTCACCGCGGTGCGAATCTAGCTGGATGACCATATGAATTGACATAGTGAAAGTATTCCTATTTCCTATCTGCACCCGTTTCTCCCGCAGTTTGAGTT
GTTTTTAGCTTTATACTTTGTCTTTCTTTGTTTGTATGCTTATTTGCCCAGGAAAAAAAGAACTGGTTTGTTTTGTAGGACACCCAAATGTCATTGTTGT
TGGTCTGTATCTTGTATAATAAGAAAGTCTGTAAGCACTAAAAACTTCAATAAAG