« Back to Corylus avellana search


Detailed information on CNT30314996


BLAST search results

BLAST vs Swiss-Prot:
sp|P93604|LRK10_WHEAT, E-value = 5e-121

BLAST vs NONCODE:
NONVVIT001259, E-value = 3e-99

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3069516Corylus avellanaQuercus suber26.93100.9588.05318forward
CNT3090659Corylus avellanaSolanum tuberosum43.3591.5977.34512forward
CNT30713283Corylus avellanaMalus domestica golden24.6423.5686.94291forward
CNT30573490Corylus avellanaVitis vinifera59.7819.2280.74706forward
CNT30707309Corylus avellanaPrunus avium55.6384.8880.82657forward

Expression of CNT30314996

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MPRAISCSLSQLRIHSLVSVEDMNFSSESFGKNS*

>peptide 2 (33 aa)
MPLDAPESNNCKFLCNFSISIIINKDSHVFFLF*

>peptide 3 (46 aa)
MMYHTQCFYFINEFFPIFIGNVEDLHCNMNFIGKLSFEYCSICSFA*

>peptide 4 (33 aa)
MHQSPIIASFFAILASPSSSIKIRMSSFCSKIL*

Sequence

>CNT30314996
CAGGTACGTACATTTTTATAATCTCCAAATTACTCTTACATTGATACAAGAAAAAACTTGAAGTCGCTGCATTGACTCCAAGTCTACAAGATTAATAACT
TCTAATTAAGAGTACAAGATCATTGCAACCTATATTGTTATAACATACGCCCAATTTATATACAACTATTCTCATTCTAGGATGACCTCTAACTCATGGT
TTAAACGTTTTATAGGTATATTTGCATGAATTTGTACAGGGCCTACAGAGGCAAAGGGATTAGGAGGCATAATTAATTTATCTTCTTCTCCTTCTAACAT
TTGAACCGCATCTTTCATAGAAGGACGATCCACTGGATGCCATTGGATGCACCAGAGTCCAATAATTGCAAGTTTCTTTGCAATTTTAGCATCTCCATCA
TCATCAATAAAGATTCGCATGTCTTCTTTTTGTTCTAAAATATTGTAGATCCATTCCGGAAAGTAGACTTGACTAGTGTTCTCAACTGTAACGTCAACAT
TTTTCCTTCCTCCAACTATTTCAAGTAACAATATTCCAAAGCTATAAACATCTGATTTAGAAGACACATTTCCAAAATTTCTAGAGAACACTTCGGGTGC
AATGTAACCCATAGTTCCCCTGGCTGTGGTCATGGACACTGCACTTTGATCCTTTGAACACAACTTTGCAAGACCAAAATCAGAAATTTTTGGATTAAAG
TTTTGGTCTAGCAAAACATTGTGAGGTTTGATATCGAAATGGAGGATTCGTTGGCCGCATCCTTGGTGAAGATACTCAATTCCTTTTGCTATGCCAAGAG
CAATATCATGTAGCTTATCCCAATTAAGGATACATTCCTTGGTGTCCGTTGAAGATATGAACTTCTCTAGTGAATCATTTGGTAAGAACTCATAAACTAA
AGCTCGTCTAAATCCATCAGCACACAAGCCAACCAAGCGAACCACGTTAACATGATGTATCATACCCAATGTTTCTACTTCATTAATGAATTCTTCCCCA
TTTTCATTGGAAATGTTGAGGATCTTCACTGCAACATGAATTTCATTGGAAAGCTTTCCTTTGAATACTGTTCCATATGCTCCTTCGCCTAGCTTCTCAG
TAAACTGATTTGTAATCCTTTTAATATCAACATACGAGTATCTTGTGGGTTTGAAATTTCTGTAATCTTCCAAAAACTTTT