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Detailed information on CNT30314569


BLAST search results

BLAST vs Swiss-Prot:
sp|Q31708|RT04_ARATH, E-value = 3e-93

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30527430Camelina sativaEucalyptus grandis18.4658.8687.63299forward
CNT30373827Camelina sativaArabidopsis thaliana39.0161.7298.26632forward
CNT30402960Camelina sativaBeta vulgaris15.5621.5992.46252forward
CNT30708145Camelina sativaGlycine max7.944.9192.97128forward
CNT30666432Camelina sativaTriticum dicoccoides9.6943.3796.18157forward
CNT30651680Camelina sativaRosa chinensis11.4239.9695.14185forward
CNT30152803Camelina sativaPrunus persica14.8882.5393.36241forward
CNT30103326Camelina sativaOryza rufipogon13.092596.23212forward

Expression of CNT30314569

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MIVIRLNKKWNVEKKGRNSIIVRFIPRSSKKTDSSFPKRSSLVLLT*

>peptide 2 (34 aa)
GWAIIAPLHPQARCPPRRATLSNPSQPTLLANGG*

>peptide 3 (29 aa)
MSDYADLYMFWPRPFLLRRGRFGSFNLMS*

>peptide 4 (39 aa)
MSKMEVALMIKISGETAKKRLNMWEDPNEFCFHFPRMEH*

Sequence

>CNT30314569
GGGCTGGGCGATAATAGCTCCTCTGCATCCCCAAGCGCGCTGCCCTCCTAGGCGCGCAACACTAAGTAATCCAAGCCAACCCACATTACTGGCTAACGGC
GGATAATCATATTTCTTAGAGGTACTAAATACAACTCCATGAATGAGCAAAATGGAGGTTGCATTAATGATAAAGATCTCTGGGGAAACCGCTAAAAAAA
GATTGAACATGTGGGAGGATCCGAACGAATTCTGCTTTCATTTCCCCCGTATGGAGCACTGAGTCACTTACGTTACGGTCTTCAGCGGGCAGGCTGCACT
CTAGGCGACGGCTAGGAAGGATCGCTAGACCAGCAGCCAAACCAACAATGAATATATAATATAATGATAGTGATTCGGCTCAATAAAAAATGGAATGTAG
AAAAGAAAGGGCGGAATAGCATAATTGTCCGATTTATTCCTCGATCTTCAAAGAAGACTGACTCCTCCTTTCCGAAAAGATCGTCCTTGGTCCTTTTGAC
ATAAGATTCTCGGCCGCTCAAGAGACTCTCTCTCGTATATATATTTATACGCAATATCTTGACTCCTACTACCCCTCCTTTCCGAAAAATTGATTGAGTC
TTTGTCTAAGCGAGTTTTCTAGGCCGGGTGACCTGGCCACTTCTATTGCTTATCTTTTCATTAAATCTTTTGTTCTCTAGCGGACTTTCCGACTTCAACT
GGACCACCCACCCGGACTAGGAACCCGAATTTATCCGCCTATCCCCGTCGAAGAAGGGGCGACGGCCTTGATTATGCCGGGCATGCTCCCCGAACCCCAC
CCAATTAATAAGACTAAGTAAAAAAAAAATGGAAATAGTGAATCAAGATCTAGATGGATCCCTATCTTTCTCTCTATCCACGGGATACCTATCTAGATGA
AAAAATCCATCTATGAATCGATCTAGACTATCCTCTATCCGGATAGAGATGTCCCTATGAGTGACTACGCCGATCTTTATATGTTTTGGCCACGTCCGTT
TCTGCTCCGAAGAGGAAGGTTTGGATCTTTTAATCTTATGTCGTGAGGGATATGACCTATGTTAGGTCCATAAGATACCACAGCTTTTGGTGTTCTATGA
TTAACCTCCGAATAATGAGTAGGTAGTTCGATCCTTTTGATTCTTCTCTTCATAGTCAACTTATGGGGGGATGCGAAGCAATAGGTCGAATTACTATATA
AAGATAAAGAAGAGTTGTAAACTATAGGACTGATTGTTCGAGTAGGAAGATTTAGGTTTTTCTCCTTCCTTCTCTTCGATAAGAATAGGGATTTTAACAA
ATTCCTCTTCATTCTCTTGTACTCAGCGAAGGAACTTCCTAAGCATACTTTTTCGGATCCAAACTTCTTTGTTCTTTCTAAGTCTTCTTTTTGCATAGAA
GAACGCAACTATTGCAAAAACCAGGATTTTAGTAGTAGGCGGCATCCCCTCTTAGTTTTGAGTAGGTGAAACCATTCAGTTTTGCTTCTTTTCCACATTC
TTAGCGGTTGATGCACTAATTTGCCTATGATTTTTTAAACTGAAAATTTCTTTATAGAAAGATCTCTTTATTTCTTCACCGCGTATTACCGCGTTATTTT
CTTGAAAAGATATTATATCA