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Detailed information on CNT3031445


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONTPRT002153, E-value = 1e-70

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381906Theobroma cacaoManihot esculenta84.0479.2282.99911forward

Expression of CNT3031445

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MSLCWSGGIPSLSWILALTLSMVSELSTSRVMVLPVRVFTKICIF*

>peptide 2 (45 aa)
QISNIKEKEKKALPYYDSILNLKQRQNLSFRTITAHHGDEGQGGG*

>peptide 3 (61 aa)
MSRCWSGGMPSLSWILALTLSIVSELSTSRVMVLPVKVLTKICIPPRRRRTRWRVDSFWML*

Sequence

>CNT3031445
CCCAGATATCAAACATTAAAGAAAAAGAAAAAAAGGCACTTCCTTATTATGACAGTATCTTAAATTTAAAACAACGACAAAACCTTTCCTTTAGAACAAT
CACTGCCCACCACGGAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGAATGTTATAATCAGCTAAAGTCCTCCCATCCTCCAATTGCTTCCCGGCAA
AGATAAGCCTTTGCTGATCTGGGGGGATTCCTTCCTTATCCTGAATCTTTGCCTTGACATTATCGATTGTATCCGAACTTTCCACCTCCAAGGTGATTGT
TTTTCCAGTCAAGGTCTTGACAAAAATCTGCATTCCTCCACGAAGCCTCAAAACAAGATGAAGGGTTGATTCCTTTTGTATGTTGTAATCAGCCAAGGTC
CTCCCGTCCTCAAGCTGCTTCCCAGCGAAGATCAATCGTTGTTGGTCTGGTGGGATCCCTTCCTTATCTTGGATCTTGGCCTTAACGTTATCAATCGTGT
CCGAGCTCTCGACCTCCAGGGTTATAGTCTTTCCTGTCAAGGTTTTGACAAAGATTTGCATGCCTCCACGGAGCCTGAGGACAAGGTGGAGAGTCGACTC
CTTTTGGATATTATAATCAGCCAAAGTACGGCCGTCCTCCAGCTGTTTCCCGGCGAAGATGAGCCGCTGTTGGTCGGGAGGGATGCCTTCTTTGTCCTGG
ATTTTGGCCTTGACGTTGTCGATCGTGTCGGAACTCTCGACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTTTTGACAAAGATTTGCATACCGCCACGAA
GACGGAGGACCAGGTGGAGAGTTGACTCCTTCTGGATGTTATAATCCGCCAAGGTACGGCCGTCTTCGAGCTGTTTGCCAGCGAAGATGAGCCTTTGCTG
GTCGGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCCTTAACGTTGTCGATGGTGTCGGAACTCTCGACCTCGAGAGTTATGGTCTTGCCGGTCAGGGTT
TTCACGAAGATCTGCATCTTCTAAAAGGCTATGAGAATAATCTGAGGAGATGATTTGAGAAAGATTTTGATTTGCTCTGTTTGG