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Detailed information on CNT30314318


BLAST search results

BLAST vs Swiss-Prot:
sp|Q941L0|CESA3_ARATH, E-value = 4e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677502Camelina sativaSetaria viridis56.5451.4981.5173forward
CNT30639474Camelina sativaNymphaea colorata24.1811.7887.8474forward
CNT30532104Camelina sativaEucalyptus grandis24.1819.8985.1474reverse complement
CNT30499723Camelina sativaCoffea canephora23.8613.7286.373forward
CNT30270249Camelina sativaChenopodium quinoa55.568.583.53170forward
CNT30287901Camelina sativaTriticum aestivum30.3935.0991.493forward
CNT30224742Camelina sativaHordeum vulgare25.1632.9185.7177forward
CNT30393905Camelina sativaTriticum turgidum45.142.4683.33138forward
CNT30144912Camelina sativaMedicago truncatula20.5923.4290.4863forward
CNT30608876Camelina sativaGossypium raimondii43.7924.9583.58134forward
CNT30229639Camelina sativaAnanas comosus45.7523.8183.57140forward
CNT30655297Camelina sativaRosa chinensis30.0716.6486.9692forward
CNT30689838Camelina sativaTriticum urartu28.128.8687.2186forward
CNT30722091Camelina sativaTriticum spelta31.3710.5382.2996forward
CNT30362547Camelina sativaSorghum bicolor28.117.786.0586forward
CNT30572236Camelina sativaVitis vinifera57.1929.5184175forward
CNT3023073Camelina sativaPopulus trichocarpa53.5918.0280.49164forward
CNT30102429Camelina sativaOryza rufipogon42.8118.4288.55131forward
CNT30115557Camelina sativaOryza nivara39.8719.7783.61122forward
CNT30112612Camelina sativaFicus carica39.8713.3683.61122forward

Expression of CNT30314318

Peptides detected in this lncRNA

>peptide 1 (50 aa)
QQREDGSQENRPDHNNGRSPVLTTHQTLEERVQVNNHPEGKEQLTKEWSP*

Sequence

>CNT30314318
CACAACAGCGAGAAGATGGAAGCCAAGAGAACAGACCAGACCACAACAATGGTAGGAGTCCGGTTCTGACGACCCATCAAACCCTTGAGGAAAGGGTACA
AGTGAACAATCACCCAGAAGGCAAAGAACAACTTACCAAAGAGTGGTCCCCATGATTGGTATCCACTGTTGATAGCATAAGAGACTCCTGCAACAACTCC
CACGAGCAGATACTCCACCAATGACCCAAAACTGCTCGTTTCTCCACCATTCGTCTATGCCTACACCACTCCACCTCATTTCTAGGATACCCGTGGCAAA
AATGGA