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Detailed information on CNT30313757


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674332Camelina sativaSetaria viridis8.7821.9490.9177forward
CNT30316236Camelina sativaCorylus avellana26.6850.9884.19234forward
CNT30547574Camelina sativaIpomoea triloba13.3432.9688.03117forward
CNT30276060Camelina sativaChenopodium quinoa27.7138.3387.24243forward
CNT30379936Camelina sativaManihot esculenta23.0360.4884.65202forward
CNT30405823Camelina sativaBeta vulgaris10.620.6787.193forward
CNT30711584Camelina sativaGlycine max25.3131.5384.68222forward
CNT30395070Camelina sativaTriticum turgidum42.8749.1581.91376forward
CNT30561656Camelina sativaActinidia chinensis57.9236.2983.07508forward
CNT30552635Camelina sativaOryza glaberrima29.7625.1484.29261forward
CNT3059659Camelina sativaArabidopsis lyrata24.5249.5494.88215forward
CNT3014085Camelina sativaZea mays29.342.1383.27257forward
CNT30605685Camelina sativaGossypium raimondii29.6534.0382.31260forward
CNT30369654Camelina sativaOryza glumipatula29.8729.7784.73262forward
CNT30107537Camelina sativaOryza longistaminata29.8728.5183.97262forward
CNT30149525Camelina sativaBrachypodium distachyon11.5233.4488.12101forward
CNT30100253Camelina sativaOryza rufipogon29.7623.6884.29261forward
CNT30497701Camelina sativaDigitaria exilis25.5468.9283.04224forward
CNT30116094Camelina sativaOryza nivara29.7629.6684.29261forward
CNT30604019Camelina sativaOryza punctata29.7677.2284.29261forward

Expression of CNT30313757

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MNNQMRREYETSKDKINIKIFVNTITKVLN*

>peptide 2 (30 aa)
MPLMFSSQRGPSLEAHWKPATTESLISLRY*

Sequence

>CNT30313757
CCTAACAATTGTGCATGAATAATCAGATGAGAAGAGAATATGAAACAAGCAAAGACAAAATCAACATCAAGATATTTGTGAACACAATAACAAAAGTTCT
CAACTAGAAAAAGTAACACATTGAGGGGGATGGCGATAGAATAGTCTTCACAATCCATCATTTCAAAAGAGTAATCTCATAAAACACAAACAAAAATAAA
ATAGAGAGAGAGTAATAACCATAGTGAAAGAAGTTCTTTGGCAAAGAAGCTTCTTAAAGCTTGTCTTCGAAATCAGATAGGGGAGTCATCTGTCCCTTCA
AACCCTTCCTCCTCCTGATTTCAGTCACCAGAGCTGAAGCCTGAGTTCCTTCCTCAAGAGGGTCAGAAGGCATCATCTCCCAATGATCAAACACAGACTG
CGGGAATGCCTGTCCTGAGGTTGCTGCCCTAAGCTGAGCCGAGAATCCAAACGACTCCACAACAGGCAGGTACGCCTTGATGTTGTACAGTGGTGTCCCT
GGCCTCTGCATCTCCTCAAAGACGTGTCCTCTCTTCTGATTCAGCACGCTGTAGATTCCTCCAAGAGCTCCCTCTGGTGCCTGGATCTCAACCATGTATA
CAGGCTCCAAAATCGGGGCTTGGCTGTGAGCTGGGAAGCGTATATGACTCTTCTGGCCGTTGGGATGACCTGACCACCTCCTCTGTGGATCGCATCAGAG
TGAAGAACCACATCACAAACCTCAAAACAGATGCCTCTCATGTTCTCTTCGCAAAGAGGACCTTCCTTGGAAGCCCACTGGAAACCAGCCACCACTGAGT
CCTTGATTTCATTAAGGTACTGAACTCCCTTACACATATCAACCACCATGTTAGGCCCTGTGGTTTCAGGTCCAAAC