Detailed information on CNT30313686


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8VZ87|CB1B_ARATH, E-value = 1e-146

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3079851Camelina sativaBrassica juncea73.781.2388.86835forward

Expression of CNT30313686

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHLLWITSSSRFLANVSGSAESPAVSHP*

>peptide 2 (91 aa)
MSYLINDKSYEVFANLHLKVSNHRPQTQTFSFSSCLSLEFKRLKKRKLQTDKNLAHFPGTKLVAKAHALLLTGSAKWSARFSIGPLPVTMA*

>peptide 3 (35 aa)
MENIANLPFLSSFTFNSANASGSVAKPNGSKLPPG*

>peptide 4 (97 aa)
MVSKVLYRSLTSDNGLNEESKHGEHSQSSVLKLLHLQLSECLWVGSQTQWVEAASGVKQVLGLSPRDHLQRLCSLQQLPSRSLEWPRSPKCSEHGPS*

>peptide 5 (61 aa)
MGCLMVPLAWQQSSSLSHGRFRGLLRPLEKDSQPFRRRQGRREPLLRRPLKCFCFFLFLGD*

Sequence

>CNT30313686
TTCAGTTTTTGAGTTACCATATTACGAGACGAGTATGAGAGAAAAATGAGTTATTTGATTAATGATAAATCATATGAAGTCTTTGCAAATTTACATCTGA
AAGTCTCAAACCATCGACCACAAACACAAACCTTCTCTTTCTCCTCCTGTCTCTCACTCGAATTCAAAAGACTGAAAAAAAGAAAATTACAAACTGATAA
AAACTTGGCTCACTTTCCGGGAACAAAGTTGGTGGCGAAGGCCCATGCGTTGTTGTTGACTGGATCGGCCAAATGGTCAGCAAGGTTCTCTATCGGTCCC
TTACCAGTGACAATGGCTTGAACGAAGAATCCAAACATGGAGAACATAGCCAATCTTCCGTTCTTAAGCTCCTTCACCTTCAACTCAGCGAATGCCTCTG
GGTCGGTAGCCAAACCCAATGGGTCGAAGCTGCCTCCGGGGTAAAGCAAGTCCTCGGCCTCTCCCCAAGGGACCATCTCCAGCGACTCTGTAGCCTTCAA
CAGCTCCCATCAAGATCACTTGAGTGGCCCAGATCGCCAAAATGCTCTGAGCATGGACCAAGCTAGGGTTTCCCAAGTAATCGAGTCCTCCATCGCTGAA
GATTTGTGAACCGGCCTTGAACCAAACCGCCTCTCCGAACTTGACTCCGTTCCTGGCCAAAAGCTCAGGGAAGACGCAGCCAAGGGCTCCGAGCATGGCC
CACCTGCTGTGGATAACTTCTAGCTCACGGTTCCTTGCGAATGTCTCGGGGTCAGCAGAGAGTCCAGCGGTGTCCCATCCGTAGTCTCCGGGGAACTCTC
CGGTAAGGTAGCTTGGTGATTCGCCGGAGAATGGGCCCAAGTACTTAACTCGGTCGGATCCGTACCATGGGCTGCCTGATGGTCCCTTTGGCTTGGCAAC
AGTCTTCCTCATTGTCACACGGCCGCTTCCGAGGACTTCTGAGGCCGCTGGAGAAAGATTCACAGCCTTTCCGGCGAAGGCAGGGGAGGAGAGAGCCATT
GTTGAGGCGGCCATTGAAATGTTTTTGTTTTTTTTTATTTTTGGGTGACTAACTTGTGAGTGAGAGTGATTGAAAATGTTTATGTAGGTTTGGATTATAT
AGGGATATTGCGAGTAACGTTTGTTATCTCTGA