Detailed information on CNT30313642


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 2e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30171029Camelina sativaTrifolium pratense36.3134.0286.43199forward
CNT30145117Camelina sativaMedicago truncatula67.3440.1184.01369forward
CNT30611387Camelina sativaArabis alpina38.8777.7493.9213forward

Expression of CNT30313642

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MVSKVLYRSLTSDNGLNEESKHREHSQSSVLELLYLQLSEGLWVVAKPNGSKLPPG*

>peptide 2 (48 aa)
MGRSCLRGKASPRPLQVDHLQRLCSLQRLPSRSLEWPRSPKCSERGPS*

>peptide 3 (94 aa)
ERKMSYLINDKSYEVFANLHLKVSNHRPQTQTFSFSSCLSLEFKRLKKRKLQTDKNLAHFPGTKLVAKAHALLLTGSAKWSARFSIGPLPVTMA*

Sequence

>CNT30313642
TGAGAGAAAAATGAGTTATTTGATTAATGATAAATCATATGAAGTCTTTGCAAATTTACATCTGAAAGTCTCAAACCATCGACCACAAACACAAACCTTC
TCTTTCTCCTCCTGTCTCTCACTCGAATTCAAAAGACTGAAAAAAAGAAAATTACAAACTGATAAAAACTTGGCTCACTTTCCGGGAACAAAGTTGGTGG
CGAAGGCCCATGCGTTGTTGTTGACTGGATCGGCCAAATGGTCAGCAAGGTTCTCTATCGGTCCCTTACCAGTGACAATGGCTTGAACGAAGAATCCAAA
CATAGAGAACATAGCCAATCTTCCGTTCTTGAGCTCCTTTACCTTCAACTCAGCGAAGGCCTCTGGGTCGTAGCCAAACCCAATGGGTCGAAGCTGCCTC
CGGGGTAAAGCGAGTCCTCGGCCTCTCCAAGTGGACCATCTCCAGCGACTCTGTAGCCTTCAACGGCTCCCATCAAGATCACTTGAGTGGCCCAGATCGC
CAAAATGCTCTGAGCGTGGACCAAGCTAGGGTTTCCCAAGTAATCGAG