« Back to Camelina sativa search


Detailed information on CNT30313614


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SHE8|PSAF_ARATH, E-value = 2e-65

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641545Camelina sativaNymphaea colorata32.9915.0684.38128forward
CNT30513785Camelina sativaJuglans regia24.4815.2789.4795forward
CNT30371574Camelina sativaArabidopsis thaliana68.8151.6495.13267forward
CNT30618119Camelina sativaSesamum indicum27.3220.6685.85106forward
CNT30273262Camelina sativaChenopodium quinoa28.356.6581.82110forward
CNT3019440Camelina sativaCitrullus lanatus27.5828.2385.98107forward
CNT30525128Camelina sativaPhaseolus vulgaris64.435879.2250forward
CNT30709011Camelina sativaGlycine max64.4327.5381.6250forward
CNT30562394Camelina sativaActinidia chinensis25.5215.7182.8399forward
CNT3085970Camelina sativaVigna radiata67.5334.9880.53262forward
CNT30540068Camelina sativaBrassica napus64.4334.0190250forward
CNT30144424Camelina sativaMedicago truncatula37.6329.8680.14146forward
CNT3075737Camelina sativaBrassica juncea25.7711.7989100forward
CNT30264705Camelina sativaBrassica rapa64.4329.890250forward
CNT30609169Camelina sativaGossypium raimondii27.5825.3683.18107forward
CNT30716553Camelina sativaMalus domestica golden28.0916.5984.4109forward
CNT30623157Camelina sativaDaucus carota36.0814.1482.14140forward
CNT30620828Camelina sativaCajanus cajan27.0647.9583.81105forward
CNT30356986Camelina sativaLactuca sativa26.2917.3285.29102forward
CNT3038681Camelina sativaCucumis melo27.8426.9387.96108forward
CNT30579037Camelina sativaEchinochloa crusgalli36.0814.8180140forward
CNT30174403Camelina sativaVigna angularis43.8124.4680170forward

Expression of CNT30313614

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MKPRKTIRLAKGTSMMISFIAGFFSPLIALK*

>peptide 2 (40 aa)
MNSPQCLWSPFTIKCGKPSDPHNSPNRIPGVMNSPQCLWSP

Sequence

>CNT30313614
GAGAGATTAGAGAGATAAGAGTAAACAAAAGCAGAAAGCAAAAGTTCTCTTAAACATCCTTAGCAATGAGATCGCCATTGATGAACTCTCTGTAGGCAGC
AACGGGCCAAATGAAACCACGGAAGACGATCCGACTAGCCAAAGGAACATCGATGATGATCTCTTTCATCGCTGGTTTCTTCTCGCCACTAATAGCTCTC
AAGTAGCTTCTTCCAACCCACCCGATCCATCCTGCAATGTAAAGGAACAGAATCCCTGGAGTAATGAACTCTCCCCAATGCCTCTGGTCTCCGTTCACTA
TCAAATGCGGTAAACCATCTGACCCGCACAACAGTCCGAACAGAATCCCTGGAGTAATGAACTCTCCCCAATGCCTCTGGTCTCCGTT