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Detailed information on CNT30313019


BLAST search results

BLAST vs Swiss-Prot:
sp|P18123|CATA3_MAIZE, E-value = 2e-110

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516671Camelina sativaJuglans regia44.4458.1280.88272forward
CNT30501026Camelina sativaCoffea canephora26.4710.6184.57162forward
CNT30616919Camelina sativaSesamum indicum26.1449.5480.62160forward
CNT30282683Camelina sativaChenopodium quinoa37.0924.6581.06227forward
CNT3021611Camelina sativaCitrullus lanatus44.4468.5179.04272forward
CNT30405516Camelina sativaBeta vulgaris21.248.2782.31130forward
CNT30708912Camelina sativaGlycine max24.0216.8880.95147forward
CNT3046375Camelina sativaPrunus dulcis54.2547.5679.52332forward
CNT30638211Camelina sativaCapsicum annuum25.8228.3281.65158forward
CNT30567580Camelina sativaActinidia chinensis40.5249.681.05248forward
CNT3085325Camelina sativaVigna radiata32.1927.8680.2197forward
CNT30668803Camelina sativaTriticum dicoccoides42.8134.0781.68262forward
CNT30263082Camelina sativaBrassica rapa37.5868.6692.17230forward
CNT30475173Camelina sativaSaccharum spontaneum42.8135.2683.21262forward
CNT30715065Camelina sativaMalus domestica golden54.2523.3579.22332forward
CNT30624536Camelina sativaDaucus carota42.3218.4379.15259forward
CNT30478285Camelina sativaArabidopsis halleri44.2878.3290.41271forward
CNT30154060Camelina sativaPrunus persica47.3928.8878.97290forward
CNT30704833Camelina sativaPrunus avium37.5832.2180230forward
CNT3022395Camelina sativaPopulus trichocarpa41.3461.5684.19253forward
CNT3038372Camelina sativaCucumis melo26.4714.7381.48162forward
CNT3050211Camelina sativaCucumis sativus26.4743.0980.86162forward

Expression of CNT30313019

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MPGTARAGQKAICSFSLKKLSMFLFKTKRPTGCRGKISSGQILVTSSGSKSNLSSSAGSMVWMKSFHSG*

>peptide 2 (38 aa)
GISDYQRRRRSWSGVVYHLSSGCQEQQEQGRKQSVRSH*

Sequence

>CNT30313019
CGGTATCTCTGACTATCAGCGTAGGAGAAGATCCTGGTCTGGAGTAGTTTATCATCTGAGTAGTGGATGCCAGGAACAGCAAGAGCAGGGCAGAAAGCAA
TCTGTTCGTTCTCATTAAAGAAGTTGTCGATGTTTTTGTTCAAGACCAAGCGGCCAACAGGTTGTAGAGGCAAGATATCTTCAGGCCAGATCTTGGTCAC
ATCAAGCGGGTCAAAATCAAACTTATCCTCATCCGCAGGATCCATGGTCTGGATGAAAAGTTTCCACTCAGGGTAGTTACCGGATGATATAGCATCGTGA
AGATCCTTGGTGGCGTGGCTGTGATTGGCTCCTCCAACAACCTTTGCCTCTTCGTCAGTCAGATTCTTGATACCACAAGTAGGTTTCCAGTGGAACTTCA
CAAAGAGAACCTTTCCAGATTTAGCAACAAGAGTGTAGGTGTGGACACCGAAACCTTCCATGTGCCTGTAATCTTGTGGGATACCAACATCATCAAACAT
CCAGCACCATGTGAGCAAACTCTCTGGCAAGTGGGACATGTAGTCCAAAATCCTCCAGTACTCTTGGATGTTAGTTTTCGGGTTTGGTTTCAAGGCATGG
ACAACATCCGGG