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Detailed information on CNT30312884


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640134Camelina sativaNymphaea colorata29.8743.981.46302forward
CNT3071371Camelina sativaQuercus suber22.7580.1486.96230forward
CNT30405832Camelina sativaBeta vulgaris42.3353.3781.54428forward
CNT30636551Camelina sativaCapsicum annuum31.7548.6483.49321forward
CNT30543621Camelina sativaBrassica napus14.9458.9891.39151forward
CNT30143750Camelina sativaMedicago truncatula42.5356.1483.26430forward
CNT30446140Camelina sativaSaccharum spontaneum87.8372.3782.32888forward
CNT30212259Camelina sativaHelianthus annuus61.3392.9581.45620forward
CNT30706279Camelina sativaPrunus avium58.9598.1984.4596forward
CNT30557952Camelina sativaPanicum hallii37.8846.9985.12383forward

Expression of CNT30312884

Peptides detected in this lncRNA

>peptide 1 (35 aa)
DGISILVIKGTFIQILNTVPLGSVGRWQMKNHHLK*

>peptide 2 (53 aa)
MQSTTTRAPSVIRSAAVTSEEKSTCPGESIRLMRYSFPSLAPVKLFKEASVIS*

Sequence

>CNT30312884
GATGGCATTAGCATACTTGTCATCAAGGGGACCTTCATACAGATTCTCAACACGGTACCTCTGGGCAGTGTGGGGAGATGGCAAATGAAAAATCATCATC
TCAAGTAGTGCAGTACTGGCAGGGAGCCACGTCTGCATAACACGCTTCATCAAAGGTTTAGCCAACAGTTCCTTCTCATCATTCTTCATCTGGACACCAA
GCTTGGCCAACATAGGCCACAACTTGTCCTTCTGGTCATTCATGCAAGTAGCAATGATTTGCTTGATGGGTTCATAGCAGAACTGGACAAACCCACGCTT
GCAGGTCGCGGAACCAGTGTTTTTGCCAGTCCATTTCCTGGTAGCAGGGTCAAAGAAATTTTCACCCCAAAGCCTCTCCATCATCTTAGACTCATCAACA
CCGAACTTGGAAGCATACATCTTGGCAAAGTTGGTCAGAGTAAACGCCCAACCGTGGAGACCAGCAGAAAACGCAACGGTACCCTTCTCTGGATAAACCT
GAACATCACCAAGGAGAGGATCCTCGTACGTAGCCATAATGACATTAGCATTCTCAATGACCCTCGAGAAAGTCTGGTAAGCCTCCTCACCATCAACCTG
AAGCTCAAGGAAACACCTGTCCATCTTGTTGACAGTCAAGACGGGTCGAATCCTCTCACCAAGAGCCTGACGTAGAACAGTCTCAGTCTGAACGCAGACA
CCCTCAATGCAGTCGACCACTACAAGAGCACCATCAGTAATACGGAGTGCAGCAGTAACCTCAGAAGAAAAGTCAACGTGCCCAGGTGAATCGATAAGGT
TGATGAGGTATTCGTTTCCGTCTCTGGCTCCAGTGAAACTCTTCAAAGAAGCATCAGTCATCTCGTAGTAGAGAGAAATACCAGTGGACTTGATAGTGAT
ACCACGTTCTGCCTCATCAGCTCTGGTATCAGTCATACGAACATCACCAGCAACCTCTTGGGCAATGATACCAGCAGCAGCGACCAAGGAATCAGTGAGA
GTGGATTTCCC