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Detailed information on CNT30312779


BLAST search results

BLAST vs Swiss-Prot:
sp|P69325|UBIQP_SOYBN, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30193041Camelina sativaSecale cereale76.9947.5485.5917forward
CNT30540600Camelina sativaBrassica napus77.1653.8787.49919forward
CNT30260967Camelina sativaBrassica rapa78.5177.0888.98935forward
CNT30477817Camelina sativaArabidopsis halleri77.1685.8989.34919forward

Expression of CNT30312779

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MVSELSTSKVMVFPVNVLTKICIPPRSLRT*

>peptide 2 (52 aa)
MRRCWSGGIPSLSWILAFTLSMVSELSTSRVMVLPVRVLTKICIPPRRRKTK*

>peptide 3 (52 aa)
MRRCWSGGIPSLSWILAFTLSMVSELSTSSVMVFPVRVLTKICIPPRSLSTK*

Sequence

>CNT30312779
CGGAATGTTACTAGATTTAGAAGGATATAACTCCATTAATTCGATTTTTCATTAGAAAGAAAGAAGAGAAATATAAAAAGCCACAAACATAGTTCATCAA
TTATTTATTTGGGTACTTGTAAAGCCCCAAAATACACAAGTTTTATAAGAAACTTTTGCGTAACCATAACAGAGTTTAGAAACCACCACGGAGACGAAGG
ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAATGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAG
GGATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTATCAATGGTGTCGGAGCTCTCAACCTCCAGTGTGATGGTCTTCCCGGTGAGAGTCTTGACGAA
AATCTGCATACCACCACGAAGCCTTAGCACCAAGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCAGCCAATGTGCGACCATCCTCAAGCTGTTTGCCA
GCGAAGATGAGACGTTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGGATTTTAGCCTTCACATTGTCAATGGTGTCGGAGCTCTCAACCTCGAGGGTGA
TGGTCTTGCCTGTGAGAGTCTTGACGAAAATCTGCATACCTCCACGGAGACGCAAGACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCCAA
AGTCCTGCCATCTTCAAGTTGCTTTCCCGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCTTTATCTTGGATCTTGGCCTTAACGTTGTCAATG
GTGTCAGAGCTCTCCACCTCCAAAGTAATGGTCTTTCCGGTCAACGTCTTGACGAAGATTTGCATACCACCACGGAGCCTGAGGACCTAGTGAAGAGTGG
ATTCCTTCTGGATGTTGTAGTCAGCCAAGGTACGGCCATCTTCTAGCTGCTTACCGGCAAAGATAAGCCTTTGCTGATCCGGAGGGATACCTTCCTTATC
CTGGATCTTGGCTTTGACGTTGTCGATTGTGTCAGAGCTTTCCACCTCAAGGGTGATTGTCTTTCCGGTGAGAGTCTTAACAAAGATCTGCATCTGTAAT
TCACAAACAGAGGTTAATAAATACCCAAAACAAGAATCACATTCGATCAAGAAACTAATTATCAAACCCTAGATAGAATTAACACGTTATC