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Detailed information on CNT30312715


BLAST search results

BLAST vs Swiss-Prot:
sp|P69325|UBIQP_SOYBN, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3061502Camelina sativaArabidopsis lyrata42.6759.1193.41425forward
CNT3066849Camelina sativaLeersia perrieri88.8666.2483.73885forward

Expression of CNT30312715

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MRRCWSGGIPSLSWILAFTLSMVSELSTSRVMVLPVRVLTKICIPPRRRKTK*

>peptide 2 (31 aa)
MVSELSTSKVMVFPVNVLTKICIPPRSLRTR*

>peptide 3 (68 aa)
KSHKHSSSIIYLGTCKAPKYTSFIRNFCVTITEFRNHHGDEGPSEGSTPSGCCSQPMCDHPQAAFQRR*

>peptide 4 (52 aa)
MRRCWSGGIPSLSWILAFTLSMVSELSTSSVMVFPVRVLTKICIPPRSLSTK*

Sequence

>CNT30312715
AAAAAGCCACAAACATAGTTCATCAATTATTTATTTGGGTACTTGTAAAGCCCCAAAATACACAAGTTTTATAAGAAACTTTTGCGTAACCATAACAGAG
TTTAGAAACCACCACGGAGACGAAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAATGTGCGACCATCCTCAAGCTGCTTTCCAGC
GAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTATCAATGGTGTCGGAGCTCTCAACCTCCAGTGTGATG
GTCTTCCCGGTGAGAGTCTTGACGAAAATCTGCATACCACCACGAAGCCTTAGCACCAAGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCAGCCAATG
TGCGACCATCCTCAAGCTGTTTGCCAGCGAAGATGAGACGTTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGGATTTTAGCCTTCACATTGTCAATGGT
GTCGGAGCTCTCAACCTCGAGGGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATCTGCATACCTCCACGGAGACGCAAGACCAAGTGAAGAGTAGAC
TCCTTCTGAATGTTGTAGTCAGCCAAAGTCCTGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCTT
GGATTTTAGCTTTGACATTGTCGATGGTGTCAGAGCTCTCCACCTCCAAAGTAATGGTCTTTCCGGTCAACGTCTTGACGAAGATTTGCATACCACCACG
GAGCCTGAGAACGAGATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTACGGCCATCTTCTAGCTGCTTACCGGCAAAGATAAGCCTTTGC
TGATCCGGAGGGATACCTTCCTTATCCTGGATCTTGGCTTTGACGTTGTCGATTGTGTCAGAGCTTTCCACCTCAAGGGTGATTGTCTTTCCGGTG