Detailed information on CNT30312681


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SRV5|METE2_ARATH, E-value = 5e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30404182Camelina sativaBeta vulgaris72.9442.4282.35221forward
CNT30264951Camelina sativaBrassica rapa98.0288.3993.94297forward
CNT30212158Camelina sativaHelianthus annuus21.4516.7187.6965forward
CNT30104583Camelina sativaOryza rufipogon20.4629.2587.162forward

Expression of CNT30312681

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MPQQGYQRSRSPREHSNQKELIRVQRRQR*

>peptide 2 (59 aa)
SSASKVLRDAAKSLAQMFLPSTTPAKRYFPSGKPALTKSRGLGATNQIKSKGSHTLQRS*

>peptide 3 (35 aa)
QVPPRCLETQQSHWPRCSFRQQHQQRGIFPRGNQP*

Sequence

>CNT30312681
CTCAAGTGCCTCCAAGGTGCTTAGAGACGCAGCAAAGTCATTGGCCCAGATGTTCCTTCCGTCAACAACACCAGCAAAGAGGTATTTTCCCTCGGGGAAA
CCAGCCTTGACCAAATCAAGGGGTCTTGGTGCCACGAACCAAATCAAATCCAAAGGCAGTCACACCCTTCAACGAAGTTAGGGTCTTGTATGCCTCAGCA
GGGATATCAGCGAAGTAGGTCTCCACGAGAACATTCAAACCAGAAAGAGTTGATTCGAGTTCAGCGTAGGCAGCGGTAAAGGCCTCGAGTTTGTGGCCCT
CAA