CANTATAdb - search

Detailed information on CNT30312626

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG84|UBI4P_NICSY, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30376918	Camelina sativa	Arabidopsis thaliana	55.02	99.72	89.34	713	forward
CNT30727322	Camelina sativa	Corchorus capsularis	68.52	69.87	82.32	888	forward
CNT3089455	Camelina sativa	Vigna radiata	65.74	70.07	84.51	852	forward
CNT30643414	Camelina sativa	Cannabis sativa	67.98	83.75	83.77	881	forward
CNT30120658	Camelina sativa	Citrus clementina	66.67	85.88	83.45	864	forward
CNT3051129	Camelina sativa	Cucumis sativus	65.43	95.82	82.78	848	forward

Expression of CNT30312626

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSKVIVFPVRVFTKICIPPRSLRTR*

>peptide 2 (35 aa)
MPSLSWILAFTLSMVSELSTSRVIVFPRRVLIFRF*

>peptide 3 (52 aa)
MRRCWSGGIPSLSWILAFTLSIVSELSTSKVIVLPVKVLTKICIPPRRRNTK*

>peptide 4 (40 aa)
MVSELSTSSVIVFPVRVLTKICIPPRSLRTKWRVDSFWML*

Sequence

>CNT30312626
GGCACAACCAGAGTGTGAACATCAAGCTTATAGCAACTTGTTCAGGCTTACCAATCAAACGAAGATAAAGAGTACAGATATTCAATAGAGAAGAAGTCCA
ATTTGATATTTGAAAGATAAAAGGAAGAAAACATAGTTCAATCAATTATTTAACTGGGGACTTTATAATACCCACAAACACAAAGCACAAAGTTTTTTGA
GAAACATTTTAGAAACCACCACGGAGACGGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAATGTGCGACCATCCTCAAGCTGTT
TGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATCTTAGCCTTCACATTGTCAATAGTGTCGGAGCTCTCCACTTCCAA
GGTGATAGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCATACCACCACGAAGACGCAATACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCC
GCCAAGGTACGACCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCTTGGATCTTGGCTTTCACGTTGT
CGATGGTGTCAGAGCTCTCCACCTCCAAAGTGATTGTCTTCCCGGTGAGAGTCTTCACGAAGATTTGCATACCACCACGAAGCCTGAGAACAAGATGAAG
GGTTGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTTCTACCGTCCTCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGAATACCCTCC
TTATCTTGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAACTCTCCACCTCGAGCGTAATCGTCTTTCCGGTAAGGGTTTTGACGAAGATTTGCATAC
CACCACGGAGCCTGAGGACCAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGCCAACGTACGCCCGTCCTCTAGTTGCTTTCCGGCGAAGATAAG
CCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTTTCCACCTCTAGGGTGATAGTCTTTCCG
AGAAGGGTTTTGATTTTTAGGTTTTGAAGAAACTGGAATCTCAATTGTGAGGAGGAAAGGGCTCTAGGTTATTTGATTTATAGAAAAGGATGAAGACGAC
TTGGTCTCACGAGAAAGCTAAAGCGGTGAAGCATTAACCAACTAGAATTTGACGCGTATGTATAATGGCGTGTTTACTTGCAAAGTTTTATTTTCC