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Detailed information on CNT30312622


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377811Camelina sativaArabidopsis thaliana53.993.3793.95380forward
CNT3098701Camelina sativaSolanum tuberosum16.0320.4382.3113forward

Expression of CNT30312622

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MEESHKSFRTFLEPISYIFYVRDLPIFYVWKHKLQELRVFVIEIRHYKALNADSFVDYVG*

>peptide 2 (30 aa)
MVFMLSYMSLVYTLVVKRGFILQQILTRQL*

>peptide 3 (82 aa)
MLDRLCTPSWFSRLYCEIIPQTAIRPCTFMFKSTASSILPPTFSKYMSMPLGKHLQKRKKRRISHRLVKKQLIVIRSFIGFQ*

Sequence

>CNT30312622
CAAACCCATAACAAACTATTTTATTATCCATAGAACAAAAGCCACCCACACAAACGCTGGTTGGATTTAAGTAGAAGTTTTAAATTTTCTTTCACTCACG
AGCAACAACCACAACTTGTTTCCCAACATTCTTACCATGGAAGAGTCCCACAAGAGCTTCAGGACCTTTCTCGAGCCCATCAGCTACATCTTCTACGTAC
GTGATCTTCCCATCTTTTATGTGTGGAAGCACAAACTCCAGGAACTTCGAGTATTTGTCATAGAAATCAGACACTACAAAGCCTTGAATGCGGATTCGTT
TGTAGATTATGTTGGATAGGTTGTGTACACCTTCCTGGTTCTCAAGATTGTACTGTGAGATCATTCCACAGACAGCGATACGTCCGTGCACGTTCATGTT
TAAGAGCACTGCGTCTAGCATTTTGCCTCCTACGTTCTCAAAGTATATGTCAATGCCCTTAGGGAAACACCTGCAAAAAAGAAAAAAAAGGAGGATATCT
CATAGATTAGTCAAAAAGCAGTTGATTGTAATTCGGAGTTTCATTGGTTTCCAATAAATTAAGGTTGTTTCCCATGTAGAATCATGGTGTTCATGCTTTC
ATACATGTCTCTGGTTTATACTTTAGTTGTGAAACGCGGCTTTATACTGCAACAGATCCTAACCAGGCAGTTATAAACATGAAAAAGCTTTGAAATAAGT
GGTTA