« Back to Camelina sativa search


Detailed information on CNT30312611


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30404925Camelina sativaBeta vulgaris23.121.4188.16152forward
CNT30543269Camelina sativaBrassica napus45.1410.0391.25297reverse complement

Expression of CNT30312611

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MFKSKKSGLYQSKGGYVVRRVRRKVMFNLGRSLSRSMYNSRLINPKSKDPETQGHYS*

Sequence

>CNT30312611
GGAGAAGGAAATAAAGAAGAAGATGCCCAAAGGCTGTTCGAAGCAAGAAAAATAGCCAAGAGTAATCAAGCTATGAGATAGTCTTCCAAGCTATTTCTAA
GGTTTGATTGTGAGTTAAACTTGAAGATGGAAAGCTGATCGAGAAGTTATCCAGATTTTTCAATCGAAGATCCGCCAACTAGTTTCTCGTCTTGAGAACT
ATGTTCAAGAGTAAAAAATCCGGTTTATATCAAAGCAAGGGAGGTTATGTTGTGAGAAGAGTAAGAAGGAAGGTTATGTTCAATTTGGGCCGAAGCCTGT
CAAGATCGATGTATAACTCACGACTCATCAATCCTAAGTCAAAGGATCCAGAAACTCAAGGCCACTATTCTTGAACAAATTATATTAGAGTCCGGCTTTC
CTTTCTCATTATTACGGGTATGAAATGAAAATAACGAAAAGTTGGATTCTATTGTCAACTATTCCTATCGAAAATAGGATTGACTACTGATTCGAGCCAT
AGCACATGGTTTCATAAAACCGTACGATTCTCCCGATTTAAATCAAACTGGTTTTACATAAAGAAGATTTGACTCATCATGTTCTATTCGATACGAGTAG
GAGAAACGATATTCTTTGCTTAAATTTTTAAAAATAGAAAAATAAAAACTAAATCAAG