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Detailed information on CNT30312527


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 3e-160

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30712768Camelina sativaGlycine max80.5769.2586.18680forward
CNT30540603Camelina sativaBrassica napus81.5246.8388.66688forward
CNT30235037Camelina sativaBrassica oleracea81.7528.5788.7690forward
CNT30171036Camelina sativaTrifolium pratense81.443.8785.59687forward
CNT3075800Camelina sativaBrassica juncea80.3399.7188.64678forward
CNT30260766Camelina sativaBrassica rapa81.7577.1888.7690forward

Expression of CNT30312527

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSSVMVFPVKVLTKICIPPRSLNTK*

>peptide 2 (42 aa)
MILIPIMIRKRDKRKDTIVHRIIFSWGLYKAPKHKLLKKLTK*

>peptide 3 (31 aa)
MVSELSTSRVMVFPVRVLTKICIPPRRRKTK*

Sequence

>CNT30312527
TAAAGAGAACTGAATGATATTAATTCCAATCATGATACGAAAGAGAGATAAAAGAAAAGACACAATAGTTCATCGAATTATTTTTAGTTGGGGGCTTTAC
AAGGCCCCAAAGCACAAGTTGTTAAAGAAACTTACAAAGTAACCATAACAGAGATTAGAAACCACCACGGAGACGGAGGACCAAGTGAAGGGTCGATTCC
TTCTGAATGTTGTAGTCAGCCAAAGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGAA
TCTTAGCCTTCACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGTGTGATGGTCTTCCCGGTCAAAGTCTTAACGAAAATCTGCATACCACCACGAAG
CCTTAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAATGTGCGTCCATCCTCGAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGG
TCCGGAGGGATCCCTTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCAACCTCGAGGGTGATGGTCTTCCCTGTGAGAGTCT
TGACGAAAATCTGCATACCTCCACGGAGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCTAAAGTCCTGCCGTCTTCTAGCTG
CTTACCGGCAAAGATAAGCCTTTGCTGATCCGGAGGGATACCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCAGAGCTTTCCACCTCG
AGGGTGATCGTCTTTCCGGTGAGAGTCTTAACGAAGATTTGCAT