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Detailed information on CNT30312471


BLAST search results

BLAST vs Swiss-Prot:
sp|P27985|RBS2_BRANA, E-value = 5e-74

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512567Camelina sativaJuglans regia29.6453.1180.63222forward
CNT30378283Camelina sativaArabidopsis thaliana59.0139.5390.27442forward
CNT30282594Camelina sativaChenopodium quinoa29.6441.581.98222forward
CNT30712618Camelina sativaGlycine max26.333.7381.73197forward
CNT30633374Camelina sativaCapsicum annuum30.4426.5779.82228forward
CNT30543822Camelina sativaBrassica napus35.2591.0393.18264forward
CNT30235546Camelina sativaBrassica oleracea34.8531.4592.72261forward
CNT3062250Camelina sativaArabidopsis lyrata56.4839.7691.49423forward
CNT3075084Camelina sativaBrassica juncea34.5829.8494.21259forward
CNT30261239Camelina sativaBrassica rapa33.7832.0393.68253forward
CNT30613234Camelina sativaArabis alpina31.7841.7594.96238forward
CNT30620550Camelina sativaCajanus cajan24.9715.6181.82187forward
CNT30573704Camelina sativaVitis vinifera24.4323.4382.51183forward
CNT30725197Camelina sativaLupinus angustifolius24.325.7882.97182forward
CNT30115242Camelina sativaEutrema salsugineum24.8337.1394.09186forward
CNT3039544Camelina sativaMarchantia polymorpha10.5529.788.6179forward

Expression of CNT30312471

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MEASTLSSTVHRSIRVCFRAHGTQIRAIHTS*

Sequence

>CNT30312471
GATCATCGGAATAAAAAATCAAGACGCAGAGATATAGAAATTACATTATTCATAAATCAGACATTTGACAATCGGATATAGAAAATGTCTCAGAAACAGA
AAAAAAAAAAACACAGACAATAGGAAATGAAATGAGTAGAGACAATATATATGACTTTTTGAGAAAGGGAATTAAGCACCGGTGAAGCTTGGGGGCTTGT
AGGCGATGAAACTGATGCATTGGACTTGACGGTTGTTGTCGAATCCGATGATCCTAATGAAGGCGTTAGGGTACTCCTTCTTGCACTCTTGCACTTCCTT
CAACACTTGAGCGGAGTCAGTGCATCCGAACAATGGAAGCTTCCACATTGTCCAGTACCGTCCATCGTAGTATCCGGGTGTGCTTCCGTGCTCACGGTAC
ACAAATCCGTGCTATACACACATCGTAAAACCATTCAATACAATTGGTATTGGACGATGATTCACAATGTTTTTCGGTTTAGAAAATCCGACTATTGACT
TTGGTTTCTTGCAGTGTAAGTAAAATTAGAGACAAAGGAAGAGTTGTGTGTTAATTACCTCCAACTCGAATTCAACACAAGGAATCCACTTGTTGCGGAG
AAGGTAGTCAACTTCCTTACCCAATTCGACATCGGTAAGGTCAGGAATCCACTTGTTGCGGAGAAGGTAGTCAACTTCCTTACCCAATTCGACATCGGTA
AGGTCAGGAAGGTAAGATAAAGTCTCAAACTTCTTCTTTCCAATTGGTG