Detailed information on CNT30312423


BLAST search results

BLAST vs Swiss-Prot:
sp|P17745|EFTU_ARATH, E-value = 8e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691003Camelina sativaOryza sativa40.3515.7579.89184forward
CNT30376649Camelina sativaArabidopsis thaliana42.328.7592.75193forward
CNT30237230Camelina sativaBrassica oleracea42.3222.9889.64193forward
CNT3075841Camelina sativaBrassica juncea42.3223.4587.56193forward
CNT30262296Camelina sativaBrassica rapa42.3223.9587.56193forward
CNT30100297Camelina sativaOryza rufipogon40.3513.9579.89184forward

Expression of CNT30312423

Peptides detected in this lncRNA

>peptide 1 (46 aa)
ILSLVLNRSSVDCDTTSSLLRGRVNLVVLFSDAVSHGSESHGESCG*

>peptide 2 (55 aa)
RFSVSYSTVAVLIVIPRALSSGAASISSYFLATLFPMEARAMVRAAVRVVFPWST*

Sequence

>CNT30312423
CGATTCTCAGTCTCGTACTCAACCGTAGCAGTGTTGATTGTGATACCACGAGCTCTCTCCTCCGGGGCCGCGTCAATCTCGTCGTACTTTTTAGCGACGC
TGTTTCCCATGGAAGCGAGAGCCATGGTGAGAGCTGCGGTTAGAGTAGTCTTCCCATGGTCAACGTGACCAATTGTACCGATGTTGACATGAGAAGCGGA
GGTGGGAGTAGTGGTGGTGGTTAAGGAGTAAGAAGGGAGGAAAGAGGAAGAGAGGGTTAGGGTTTTGAGTTTACCAGAGGTGGAAATGGCGGAGACAGGT
GCGGGGTAAAGAGAAGGAGAAGGGGATGAGTAGGAACAGAGGAGTCTAGAGGAAGAAGAAGAACAAGCGGCTGGAGCCGATAGCGCCATGGAAGACGGAT
TTGGAGGAGAAATCGAGAATCCCTAGGGTTTGATTGGGGGAGACGAAGAAGAGGAT