Detailed information on CNT30312280


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30698389Camelina sativaQuercus lobata45.264.0892.57942forward

Expression of CNT30312280

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MVRLVFRPYTQVRRTICTSVSLRASTRVSSGFAPLRHSSPSFGSRQACSHSNPSQKIKVGRRCTREGSRQSASLRLTGLLTR*

>peptide 2 (82 aa)
MVRLVFRPYTQVRRTICTSVSLRASTRVSSGFAPLRHSSPSFGSRQACSHSNPSQMIKVGRRCTREGSRQSASLRLTGLLTR*

>peptide 3 (93 aa)
MSERSRRPWLGFWSTACGNTREASFRPLSAKDVGGRRFVTPRQTCPRPEGLGRNLRSKTRWFTGFCNSHQVSHFATFFIDARAEISVAESRFRL

>peptide 4 (92 aa)
MLTLEPFSDDQGRSAVHPRGIPPISFLTPYGFTHPLTRTHVRLLGPCFKTGRMGSPQADARSTQMPRHAVKARAADHDHGSDVSAGVTRARA*

>peptide 5 (58 aa)
LHRRPLRPGSRPRFFSDRRALLLIEAWLLPRRPGIGRALQRHPFSGLVDSAGELLHTP*

>peptide 6 (44 aa)
MLTLEPFSEDQGRSAVHPRGIPPISFLTPYGFTHPLTRTHGTSY*

>peptide 7 (35 aa)
ICTDGRSARARALGFSATAAPSYSSRPGSCPDGRV*

>peptide 8 (37 aa)
MAHLELSIPWDGSTKQPPRPTYLKFENRSRALRPRCL*

>peptide 9 (30 aa)
MSDSLVRVSRRVEWGAHRPTPGARRCRGTP*

>peptide 10 (32 aa)
MVHGILQFTPSIAFRYVLHRCESRDIRCRESF*

Sequence

>CNT30312280
ATCTGCACCGACGGCCGCTCCGCCCGGGCTCGCGCCCTAGGTTTTTCAGCGACCGCCGCGCCCTCCTACTCATCGAGGCCTGGCTCTTGCCCCGACGGCC
GGGTATAGGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACC
ACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGGTTAGCGCGCAGTTGGGCACCGTAACCCGGCTTCCGGTTCATCCCGCATCGCCAG
TTCTGCTTACCAAAAATGGCCCACTTGGAGCTCTCGATTCCGTGGGACGGCTCAACAAAGCAGCCGCCCCGTCCTACCTATTTAAAGTTTGAGAATAGGT
CGAGGGCGTTGCGCCCCCGATGCCTCTAATCATTGGCTTTACCCGATAGAACTCGCGTCCGAGCTCCAGCTATCCTGAGGGAAACTTCGGAGGGAACCAG
CTACTAGATGGTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCGCTGCGGGCCTCCACCAGAGTTTCCTCTGGC
TTCGCCCCGCTCAGGCATAGTTCACCATCTTTCGGGTCCCGACAGGCATGCTCACACTCGAACCCTTCTCAGAAGATCAAGGTCGGTCGGCGGTGCACCC
GCGAGGGATCCCGCCAATCAGCTTCCTTACGCCTTACGGGTTTACTCACCCGTTGACTCGCACACATGGAACCAGCTACTAGATGGTTCGATTAGTCTTT
CGCCCCTATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCGCTGCGGGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCCGCTCAGGCATAGTTCAC
CATCTTTCGGGTCCCGACAGGCATGCTCACACTCGAACCCTTCTCAGATGATCAAGGTCGGTCGGCGGTGCACCCGCGAGGGATCCCGCCAATCAGCTTC
CTTACGCCTTACGGGTTTACTCACCCGTTGACTCGCACACATGTCAGACTCCTTGGTCCGTGTTTCAAGACGGGTCGAATGGGGAGCCCACAGGCCGACG
CCCGGAGCACGCAGATGCCGAGGCACGCCGTAAAGGCGCGTGCTGCAGACCACGATCACGGCAGCGACGTCTCCGCGGGCGTAACAAGAGCCCGGGCTTA
GGCCACCGCCGTAATCCGCGTCGGTCCACGCCCCGAATCGATCGGCGGACCGGATTGCTCCGTTCCGCATCCGACCGGGACGCATCGCCGGCCCCCATCC
GCTTCCCTCCCGACAATTTCAAGCACTCTTTGACTCTCTTTTCAAAGTCCTTTTCATCTTTACCTCGCGGTACTTGTTCGCTATCGGTCTCTCGCCCGTA
TTTAGCCTTGGACGGAATTTACCGCCCGATTGGGGCTGCATTCCCAAACAACCCGACTCGTAGACAGCGCCTCGTGGTGCGACAGGGTCCGGGCACGACG
GGGCTCTCACCCTCTCCGGCGCCCCTTTCCAGGGAACTTGAGCCCGGTCCGTCGCTGAGGACGCTTCTCCAGACTACAATTCGAACGCCGAAGACGTCCG
ATTTTCAAGCTGGGCTTTTCCCGGTTCGCTCGCCGTTACTAAGGGAATCCTTGTTAGTTTCTTTTCCTCCGCTTATTGATATGCTTAAACTCAGCGGGTG
ATCCCGCCTGACCTGGGGTCGCTTTGAAGACTTTGGGTCATCTAGAGCTTCCGGACAAGAGCGACCGACGATAGGGAAAGTGGATCAAGTTCACCACCGC
ATGTCGGAACGCTCCAGGCGTCCTTGGCTCGGATTTTGGTCAACCGCGTGCGGTAACACACGGGAGGCCAGCTTCCGTCCCTTATCCGCGAAGGATGTGG
GGGGACGACGATTTGTGACACCCAGGCAGACGTGCCCTCGGCCAGAAGGCTTGGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAA
TTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCGTTTTAGACTTTA