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Detailed information on CNT30312195


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30318007Camelina sativaCorylus avellana68.8549.1394.71717forward
CNT30519189Camelina sativaJuglans regia68.685394.161713reverse complement
CNT3021662Camelina sativaCitrullus lanatus68.6442.1293.931712reverse complement
CNT30730436Camelina sativaCorchorus capsularis56.5100.0795.741409reverse complement
CNT3072442Camelina sativaQuercus suber67.8897.5291.261693reverse complement
CNT30381259Camelina sativaManihot esculenta61.4384.5590.61532reverse complement
CNT30632321Camelina sativaVigna unguiculata68.5272.1193.331709reverse complement
CNT30195350Camelina sativaPisum sativum68.5250.892.741709reverse complement
CNT30508033Camelina sativaNicotiana attenuata68.6851.4492.181713reverse complement
CNT30711135Camelina sativaGlycine max67.8853.2993.861693reverse complement
CNT3047192Camelina sativaPrunus dulcis65.5248.1493.331634reverse complement
CNT30544747Camelina sativaBrassica napus68.5266.7398.31709forward
CNT30234560Camelina sativaBrassica oleracea68.1289.0998.471699forward
CNT30262710Camelina sativaBrassica rapa68.5273.1698.361709forward
CNT30206613Camelina sativaHelianthus annuus46.1966.2894.791152reverse complement
CNT30434075Camelina sativaPapaver somniferum68.7763.992.651715reverse complement
CNT3027145Camelina sativaPopulus trichocarpa45.1568.8395.831126forward

Expression of CNT30312195

Peptides detected in this lncRNA

>peptide 1 (35 aa)
ICTDGRSARARALGFSATAAPSYSSRPGSCPDGRV*

>peptide 2 (30 aa)
MSDSLVRVSRRVEWGAHRPTPGARRCRGTP*

>peptide 3 (37 aa)
MAHLELSIPWDGSTKQPPRPTYLKFENRSRALRPRCL*

>peptide 4 (36 aa)
MVRLVFRPYTQVRRTICTSVSLRASTRGGQAVKQKR*

>peptide 5 (58 aa)
LHRRPLRPGSRPRFFSDRRALLLIEAWLLPRRPGIGRALQRHPFSGLVDSAGELLHTP*

>peptide 6 (37 aa)
MAHLELSIPWDGSTKQPPRPTYLKFENRSRALRPRCL*

>peptide 7 (92 aa)
MLTLEPFSDDQGRSAVHPRGIPPISFLTPYGFTHPLTRTHVRLLGPCFKTGRMGSPQADARSTQMPRHAVKARAADHDHGSDVSAGVTRARA*

>peptide 8 (82 aa)
MVRLVFRPYTQVRRTICTSVSLRASTRVSSGFAPLRHSSPSFGSRQACSHSNPSQMIKVGRRCTREGSRQSASLRLTGLLTR*

>peptide 9 (86 aa)
MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFFSDRRALLLIEAWLLPRRPGIGRALQRHPFSGLVDSAGELLHTP*

Sequence

>CNT30312195
ATCTGCACCGACGGCCGCTCCGCCCGGGCTCGCGCCCTAGGTTTTTCAGCGACCGCCGCGCCCTCCTACTCATCGAGGCCTGGCTCTTGCCCCGACGGCC
GGGTATAGGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACC
ACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGGTTAGCGCGCAGTTGGGCACCGTAACCCGGCTTCCGGTTCATCCCGCATCGCCAG
TTCTGCTTACCAAAAATGGCCCACTTGGAGCTCTCGATTCCGTGGGACGGCTCAACAAAGCAGCCGCCCCGTCCTACCTATTTAAAGTTTGAGAATAGGT
CGAGGGCGTTGCGCCCCCGATGCCTCTAATCATTGGCTTTACCCGATAGAACTCGCGTCCGAGCTCCAGCTATCCTGAGGGAAACTTCGGAGGGAACCAG
CTACTAGATGGTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCGCTGCGGGCCTCCACCAGAGGTGGGCAGGCT
GTTAAACAGAAAAGATAACTCTTTCCGGAATTCCCGCCGACGTCTCCGGACTCCCTAACGTTGCCGTCAACCGCCACGTCCCGGTTCCGGAATTTTAACC
GGATCCCCTTTCGAAGTTCGCGCATAAGCGCTATCAGACGGGTTTCCCCCGACTCTTAGGATCGACTAACCCATGTGCAAGTGCCGTTCACATGGAACCT
TTCCCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCCGCTCCGCCCGGGCTCGCGCCCTAGGTTTTT
CAGCGACCGCCGCGCCCTCCTACTCATCGAGGCCTGGCTCTTGCCCCGACGGCCGGGTATAGGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTT
GATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGG
TTAGCGCGCAGTTGGGCACCGTAACCCGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCTCGATTCCGTGGG
ACGGCTCAACAAAGCAGCCGCCCCGTCCTACCTATTTAAAGTTTGAGAATAGGTCGAGGGCGTTGCGCCCCCGATGCCTCTAATCATTGGCTTTACCCGA
TAGAACTCGCGTCCGAGCTCCAGCTATCCTGAGGGAAACTTCGGAGGGAACCAGCTACTAGATGGTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAGA
CGAACGATTTGCACGTCAGTATCGCTGCGGGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCCGCTCAGGCATAGTTCACCATCTTTCGGGTCCCGACAGG
CATGCTCACACTCGAACCCTTCTCAGATGATCAAGGTCGGTCGGCGGTGCACCCGCGAGGGATCCCGCCAATCAGCTTCCTTACGCCTTACGGGTTTACT
CACCCGTTGACTCGCACACATGTCAGACTCCTTGGTCCGTGTTTCAAGACGGGTCGAATGGGGAGCCCACAGGCCGACGCCCGGAGCACGCAGATGCCGA
GGCACGCCGTAAAGGCGCGTGCTGCAGACCACGATCACGGCAGCGACGTCTCCGCGGGCGTAACAAGAGCCCGGGCTTAGGCCACCGCCGTAATCCGCGT
CGGTCCACGCCCCGAATCGATCGGCGGACCGGATTGCTCCGTTCCGCATCCGACCGGGACGCATCGCCGGCCCCCATCCGCTTCCCTCCCGACAATTTCA
AGCACTCTTTGACTCTCTTTTCAAAGTCCTTTTCATCTTTACCTCGCGGTACTTGTTCGCTATCGGTCTCTCGCCCGTATTTAGCCTTGGACGGAATTTA
CCGCCCGATTGGGGCTGCATTCCCAAACAACCCGACTCGTAGACAGCGCCTCGTGGTGCGACAGGGTCCGGGCACGACGGGGCTCTCACCCTCTCCGGCG
CCCCTTTCCAGGGAACTTGAGCCCGGTCCGTCGCTGAGGACGCTTCTCCAGACTACAATTCGAACGCCGAAGACGTCCGATTTTCAAGCTGGGCTTTTCC
CGGTTCGCTCGCCGTTACTAAGGGAATCCTTGTTAGTTTCTTTTCCTCCGCTTATTGATATGCTTAAACTCAGCGGGTGATCCCGCCTGACCTGGGGACG
CTTCTCCAGACTACAATTCGAACGCCGAAGACGTCCGATTTTCAAGCTGGGCTTTTCCCGGTTCGCTCGCCGTTACTAAGGGAATCCTTGTTAGTTTCTT
TTCCTCCGCTTATTGATATGCTTAAACTCAGCGGGTGATCCCGCCTGACCTGGGGTCGCTTTGAAGACTTTGGGTCATCTAGAGCTTCCGGACA