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Detailed information on CNT30312075

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3093993	Camelina sativa	Solanum tuberosum	37.72	40.61	87.74	212	forward
CNT30288144	Camelina sativa	Triticum aestivum	37.72	57.3	91.04	212	forward
CNT30386294	Camelina sativa	Triticum turgidum	37.72	57.61	91.04	212	forward
CNT30658093	Camelina sativa	Triticum dicoccoides	37.72	48.51	91.04	212	forward
CNT30608684	Camelina sativa	Gossypium raimondii	37.72	50.36	90.09	212	forward
CNT3067093	Camelina sativa	Leersia perrieri	28.29	35.57	92.45	159	forward
CNT30646927	Camelina sativa	Rosa chinensis	39.15	65.48	89.09	220	forward
CNT30689637	Camelina sativa	Triticum urartu	37.37	21.52	91.43	210	forward
CNT30721809	Camelina sativa	Triticum spelta	37.72	14.05	92.45	212	forward
CNT30338600	Camelina sativa	Eragrostis tef	36.3	42.5	90.2	204	forward
CNT30570869	Camelina sativa	Vitis vinifera	33.27	56.16	88.24	187	forward
CNT30645139	Camelina sativa	Cannabis sativa	44.48	90.58	89.6	250	forward
CNT30120727	Camelina sativa	Citrus clementina	37.72	38.55	89.15	212	forward
CNT30101083	Camelina sativa	Oryza rufipogon	36.3	38.2	90.69	204	forward
CNT30116334	Camelina sativa	Oryza nivara	37.72	34.75	90.57	212	forward
CNT30176038	Camelina sativa	Vigna angularis	35.41	50	85.43	199	forward

Expression of CNT30312075

Peptides detected in this lncRNA

>peptide 1 (45 aa)
WAPSQSPYQNACQSWSRSQRTSLQCETCGNRELGRIRYRSDQGGS*

>peptide 2 (37 aa)
MVIPRSRSALSLSNTHAYLKDLLFISAASFSNLSITRL

>peptide 3 (51 aa)
MMMTWEVKLAAPLAGSSLEFEATYPLLRSFTATFLTLNPTLSPGRASRRDS*

>peptide 4 (65 aa)
LGLLLNLLTRTPVNLGQDLRELHCNVRRVAIENWGVSVTDLTRVVHDDDLGGEVSSTLSWVILGV*

>peptide 5 (89 aa)
MHLNGLNLSGQPCGSKGHNHTSNHVLDEITMSRGVNDCAVVLGGLELPKSNIDGDTTLTLGLKFVQHPCVLERPLVHLSGLLLEPLDHTL

Sequence

>CNT30312075
CTTGGGCTCCTTCTCAATCTCCTTACCAGAACGCCTGTCAATCTTGGTCAAGATCTCAGAGAACTTCACTGCAATGTGAGACGTGTGGCAATCGAGAACT
GGGGCGTATCCGTTACCGATCTGACCAGGGTGGTTCATGATGATGACCTGGGAGGTGAAGTTAGCAGCACCCTTAGCTGGGTCATCCTTGGAGTTTGAGG
CGACGTACCCTCTCTTGAGATCCTTCACAGCAACATTCTTGACATTGAATCCAACATTGTCACCGGGAAGGGCCTCTAGAAGAGACTCGTGATGCATCTC
AACGGACTTAACCTCAGTGGTCAACCCTGTGGGAGCAAAGGTCACAACCATACCAGTAATCATGTTCTTGATGAAATCACGATGTCCAGGGGCGTCAATG
ACTGTGCAGTAGTACTTGGTGGTCTCGAACTTCCAAAGAGCAATATCGATGGTGATACCACGCTCACGCTCGGCCTTAAGTTTGTCCAACACCCATGCGT
ACTTGAAAGACCTCTTGTTCATCTCAGCGGCCTCCTTCTCGAACCTCTCGATCACACGCTTG