Detailed information on CNT30311937


BLAST search results

BLAST vs Swiss-Prot:
sp|O23290|RL36A_ARATH, E-value = 1e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694718Camelina sativaOryza sativa69.6239.6687.27165forward
CNT30671781Camelina sativaSetaria viridis57.8159.5783.94137forward
CNT30401984Camelina sativaBeta vulgaris67.5178.0583.12160forward
CNT30298301Camelina sativaTriticum aestivum31.2217.7986.4974reverse complement
CNT3087688Camelina sativaVigna radiata59.9265.7480.28142forward
CNT30668197Camelina sativaTriticum dicoccoides48.525388.7115forward
CNT3078180Camelina sativaBrassica juncea2727.3595.3164reverse complement
CNT30452338Camelina sativaSaccharum spontaneum78.0651.3988.11185forward
CNT30102486Camelina sativaOryza rufipogon68.7862.2187.12163forward
CNT30175989Camelina sativaVigna angularis64.9844.3881.17154forward

Expression of CNT30311937

Peptides detected in this lncRNA

>peptide 1 (59 aa)
VAFVLPSCGRRAWSDLHNQIACGHNDAFPGQQDCLYPSYTASPCARYASCIPCSCSRCS*

>peptide 2 (74 aa)
LLLCYLLVEDGLGLTSITRLLAVITTLSLGSKTVFTLLILRHLVQGMLLAFLVLAVGVLSFRNVHLRHKKPNPF*

Sequence

>CNT30311937
GTTGCTTTTGTGTTACCTTCTTGTGGAAGACGGGCTTGGTCTGACCTCCATAACCAGATTGCTTGCGGTCATAACGACGCTTTCCCTGGGCAGCAAGACT
GTCTTTACCCTTCTTATACTGCGTCACCTTGTGCAAGGTATGCTTCTTGCATTCCTTGTTCTTGCAGTAGGTGTTCTTAGTTTTAGGAATGTTCACCTAA
GACACAAAAAACCAAACCCTTTTTGAGTTAAACTACC