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Detailed information on CNT30311914


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FI56|CLPC1_ARATH, E-value = 3e-133

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693027Camelina sativaOryza sativa57.1239.2278.75353forward
CNT30672972Camelina sativaSetaria viridis20.7156.8981.25128forward
CNT30631438Camelina sativaVigna unguiculata41.4238.6780.86256forward
CNT30487971Camelina sativaOlea europaea53.2463.2780.55329forward
CNT30709232Camelina sativaGlycine max25.0820.7887.1155forward
CNT30300179Camelina sativaTriticum aestivum51.7827.4280.62320forward
CNT30393350Camelina sativaTriticum turgidum51.7831.9780.94320forward
CNT30171906Camelina sativaTrifolium pratense60.3642.7379.62373forward
CNT30144776Camelina sativaMedicago truncatula35.2816.684.86218forward
CNT30441093Camelina sativaAegilops tauschii39.6448.2379.59245forward
CNT30254596Camelina sativaAvena sativa80.4237.4878.67497forward
CNT3062430Camelina sativaArabidopsis lyrata8947.792.55550forward
CNT30717839Camelina sativaMalus domestica golden47.2557.4881.51292forward
CNT30685178Camelina sativaTriticum urartu51.7839.4180.94320forward
CNT30354596Camelina sativaLactuca sativa39.6422.0780.41245forward
CNT3053264Camelina sativaAmborella trichopoda24.624.2883.55152forward
CNT30150466Camelina sativaBrachypodium distachyon27.5150.1583.53170forward
CNT30581271Camelina sativaEchinochloa crusgalli18.2821.3282.3113forward
CNT30498115Camelina sativaDigitaria exilis21.8417.0280.74135forward
CNT30116632Camelina sativaOryza nivara29.2947.2681.77181forward
CNT30558331Camelina sativaPanicum hallii24.618.3685.53152forward

Expression of CNT30311914

Peptides detected in this lncRNA

>peptide 1 (59 aa)
CSSKDVVGVPLPPFSTVTVPSASTSTITESPSLISLASIFSAMLSSNSLMMALLNGLAP*

>peptide 2 (43 aa)
MSAISFTSSFVSCLNTIISSSLFRNSGLKYCFSSSVTRLLILL*

Sequence

>CNT30311914
TGCTCCTCCAAGGATGTAGTGGGAGTTCCACTTCCACCATTCAGCACAGTTACGGTACCTTCAGCGTCAACGTCCACAATCACTGAGTCTCCTTCTTTGA
TCTCTCTCGCTAGCATTTTCTCTGCCATGCTATCCTCTAACAGCCTCATGATGGCTCTTCTCAACGGTCTCGCTCCATAGCTAGGGTTGTAACCTTCGTC
TACTACTCTCTCTTTGAACCTCTCAGTCACCTGAAGCTCAATCTCTTTCTTCTTCAGTCTCTCGAACACTTCCTTCAACAGGATGTCAGCAATTTCTTTC
ACTTCCAGTTTTGTTAGCTGTCTGAACACGATCATCTCGTCTAGCCTGTTCAGGAACTCTGGTCTGAAGTACTGCTTCAGCTCCTCTGTTACAAGGCTCT
TGATTCTGTTGTAACTGCTGTCTTTCTCATCGTAGTCCAAGTCGAACCCAATACGCCTTCCTCCTTTCTCGATCACGCTACTTCCAACGTTCGATGTCAT
GATGAGAAGTGTGTTTTTGAAGTCAACTGTTCTTCCTTTGCTGTCTGTTAGTCTACCATCTTCAAGGATTTGAAGCATCATGTTGAAAACATCTGGATGA
GCTTTCTCGATCTCGTCG