Detailed information on CNT30311909


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675493Camelina sativaSetaria viridis14.827.2487.1470forward
CNT30701953Camelina sativaQuercus lobata23.4740.2287.39111forward
CNT30377298Camelina sativaArabidopsis thaliana27.2751.8192.25129forward
CNT30282455Camelina sativaChenopodium quinoa27.069.1585.94128forward
CNT3071730Camelina sativaQuercus suber23.4727.3486.49111forward
CNT30566785Camelina sativaActinidia chinensis26.6447.3783.33126forward
CNT3061941Camelina sativaArabidopsis lyrata12.923.4686.8961forward
CNT30468549Camelina sativaSaccharum spontaneum17.5536.0991.5783forward
CNT302051Camelina sativaZea mays12.6826.4388.3360forward
CNT30606370Camelina sativaGossypium raimondii23.6853.5985.71112forward
CNT30351629Camelina sativaEragrostis tef24.5235.3787.93116forward
CNT30362646Camelina sativaSorghum bicolor14.822.2288.5770forward
CNT30596757Camelina sativaOryza meridionalis17.5535.7891.5783forward
CNT30371008Camelina sativaOryza glumipatula16.2831.1790.9177reverse complement
CNT30107294Camelina sativaOryza longistaminata20.335.2989.5896forward
CNT30103405Camelina sativaOryza rufipogon13.323088.8963reverse complement
CNT30175658Camelina sativaVigna angularis10.5720.249450forward
CNT30558210Camelina sativaPanicum hallii15.0134.4790.1471forward

Expression of CNT30311909

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MISDSNWLISAWKAKVSASAIVTERRKISRRSLRFKNRSESKSKKEQRQREREREKY*

>peptide 2 (31 aa)
MISESNWLISAWKAKVSASAIVTDRRIYLRKG

Sequence

>CNT30311909
CTCCACTTAAAATTAACAAACCAAATTCTCAAATCGACAAGAACACTAAACCCTAATCGAACCTAAATCTACAGATCGATCAACTAAATCGAGTCGGAGG
AGATAAACATATAAAACATAGAGAGAGCGAGAAAAACGTACATCGGAAGAGTTACTGATGAGTTCACGAAGGAAGATCTCCTTGTTGGAGTAGAAGGTGT
TGATGATAAGCGACAGCAACTGGTTGATCTCAGCTTGGAAGGCAAAGGTCTCTGCGTCCGCCATTGTCACGGAACGGAGAAAAATATCAAGGAGGAGCCT
AAGGTTTAAGAATCGATCTGAGAGCAAAAGCAAGAAAGAGCAGAGACAGAGAGAGAGAGAGAGAGAGAAGTATTGATGATAAGTGAAAGCAACTGGTTGA
TCTCAGCTTGGAAAGCAAAGGTTTCAGCGTCCGCCATTGTCACTGACCGGAGAATATATCTACGAAAAGGTTT