Detailed information on CNT30311891


BLAST search results

BLAST vs Swiss-Prot:
sp|P27985|RBS2_BRANA, E-value = 4e-58

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30279738Camelina sativaChenopodium quinoa8.0323.2186.7668forward
CNT30235395Camelina sativaBrassica oleracea21.9663.0593.55186forward
CNT3061903Camelina sativaArabidopsis lyrata47.1141.9190.48399forward
CNT30261455Camelina sativaBrassica rapa19.7262.0889.82167forward
CNT30479769Camelina sativaArabidopsis halleri21.3723.7595.58181forward

Expression of CNT30311891

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MTFTFMQLTLPPLLAMEVMSLLALRVTGKAADDFKPLNGATMVA*

>peptide 2 (42 aa)
RKRKSYVLIYLQLEFNTRNPLVAEKVVNFLTQFDIGKVRKVR*

>peptide 3 (35 aa)
KKEELCVNLPPTRIQHKESTCCGEGSQLPYPIRHR*

>peptide 4 (80 aa)
MEASTLSSTVHRSIRECFRAHGTRTRAIHTSENHLIQLRKRKSYVLIYLQLEFNTRNPLVAEKVVNFLTQFDIGKVRKVR*

>peptide 5 (50 aa)
MTFTFMQLTLPPASEQWKLPHCPVPSIVVSGSASVLTVHEPVLYTHQKTI*

Sequence

>CNT30311891
AGAAAAAGGAAGAGTTATGTGTTAATTTACCTCCAACTCGAATTCAACACAAGGAATCCACTTGTTGCGGAGAAGGTAGTCAACTTCCTTACCCAATTCG
ACATCGGTAAGGTCAGGAAGGTAAGATAGAGTCTCAAACTTCTTCTTTCCAATTGGTGGCCACACCTATATAATTCCCAATTCCAATTATTTTCATTTTG
TTCAATTACACGTGACAAATTAACGAGTCTTATTATCAATGACATTTACCTTCATGCAGCTAACTCTTCCGCCTGCATCCGAACAATGGAAGCTTCCACA
TTGTCCAGTACCGTCCATCGTAGTATCCGGGAGTGCTTCCGTGCTCACGGTACACGAACCCGTGCTATACACACATCAGAAAACCATTTAATTCAATTGA
GAAAAAGAAAGAGTTATGTGTTAATTTACCTCCAACTCGAATTCAACACAAGGAATCCACTTGTTGCGGAGAAGGTAGTCAACTTCCTTACCCAATTCGA
CATCGGTAAGGTCAGGAAGGTAAGATAGAGTCTCAAACTTCTTCTTTCCAATTGGTGGCCACACCTATATAATTCCCAATTCCAATTATTTTCAGTTTTG
TTTAATTGTACGTGACAAACGAGTGTTATTATCAATGACATTTACCTTCATGCAGCTAACTCTTCCGCCGTTGCTTGCGATGGAAGTAATGTCGTTGTTG
GCCTTGCGGGTGACGGGGAAAGCAGCGGATGACTTCAAGCCGTTGAATGGAGCGACCATGGTGGCTTGAGCTGGGGTGGTAACCACAGCAGCGGAGGAGA
GCATAGAGGAAGCCATTACTACTTCTTCTTCTTTTCTTTCTCTTTTG