Detailed information on CNT30311864


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672484Camelina sativaSetaria viridis29.5536.9581.82143forward
CNT30272384Camelina sativaChenopodium quinoa35.331687.13171forward
CNT30404760Camelina sativaBeta vulgaris35.3319.6884.21171forward
CNT30561426Camelina sativaActinidia chinensis36.9824.2586.59179forward
CNT30171914Camelina sativaTrifolium pratense32.0218.7980.65155forward
CNT303614Camelina sativaZea mays34.9229.6582.84169forward
CNT30207996Camelina sativaHelianthus annuus28.9331.4687.14140forward
CNT3037990Camelina sativaCucumis melo20.2532.8982.6598forward

Expression of CNT30311864

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MKLAIGRLGFLSPTRARRMARLMALTASSWPMIRLWRGS*

>peptide 2 (86 aa)
MARLMALTASSWPMIRLWRVSSILRRRSDSSVDTFSTGIPVHEDTMCWMSDSVTIGPSSPVSLSALLISFPFAWIADTSALSSISLS

Sequence

>CNT30311864
CATGGCTTCTTCAGAACCAAAGTAGTAAGCTGCCAAAGCTTTGGCAAGCTCGGATTTCCCAACACCGGTTGGACCTGAGAATATGAAACTAGCGATCGGA
CGGTTAGGGTTCTTGAGTCCAACACGTGCACGGCGAATGGCTCGGCTTATGGCTTTGACAGCTTCATCTTGGCCTATGATACGTTTGTGGAGGGGTTCTT
GAGTCCAACACGTGCACGGCGAATGGCTCGGCTTATGGCTTTGACAGCTTCATCTTGGCCTATGATACGTTTGTGGAGGGTTTCTTCCATCTTGAGAAGG
CGATCAGACTCATCAGTTGATACTTTCTCTACGGGAATACCAGTCCATGAAGATACAATGTGTTGGATGTCTGACTCCGTGACCATAGGACCTTCCTCAC
CGGTCTCACTCTCTGCTTTGCTCATTTCCTTTCCTTTTGCTTGGATAGCAGATACCTCAGCTCTAAGCTCAATTTCTCTATCCC