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Detailed information on CNT30311563


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639077Camelina sativaCapsicum annuum65.6360.894.691016forward
CNT30544087Camelina sativaBrassica napus66.4766.7398.541029forward
CNT30336076Camelina sativaCynara cardunculus64.3435.4692.37996forward

Expression of CNT30311563

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MPRHLISDAHEWINEIPTVPVYYPAKPQPRERAWQNQRGKKTLLSLTLVRLCEMT*

>peptide 2 (69 aa)
MRPPPDCRPSVGASAPKGTCRWLSPFGGSAVRTALNHYFHRAAGRILCRRLKYATGYCKWQSGLAATIH*

>peptide 3 (34 aa)
MNGLTRFPLSLSTIQRNHSQGNGLGRISGERRPC*

>peptide 4 (51 aa)
MGYNPCFWSQGLLRWADPGGGHCQPRERAWQNQRGKKTLLSLTLVRLCEMT*

Sequence

>CNT30311563
AAAAAAGCATTGCGATGGTCCTTGCGGATGCTAACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGGTAAA
CGGTGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCT
ACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCAGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGAC
TTGAGAGGTGTAGGATAAGTGGGAGCTCCGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTACTCCGTGAATCGGAGATGGGGTACAACCC
CTGTTTTTGGTCCCAAGGCTTGCTTCGGTGGGCCGATCCGGGCGGAGGACATTGTCAGCCAAGGGAACGGGCTTGGCAGAATCAGCGGGGAAAGAAGACC
CTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGAGCTCCGGCGCAAGTGAAATACCACTACTTTTAACGTTA
TTTTACTTACTCCGTGAATCGGAGGCGGGGTACAACCCCTGTTTTTGGTCCCAAGACTCGCTTCGGCGGGTCGATCCGGGCGGAGGACATTGTCAGGTGG
GGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAAAAG
CTCGTTTGATTCTGATTTTCAGTACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTCGGAATTTGAAGCTAGAGGTGTCAGAAAAGT
TACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTC
ACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGCCCGCGTCGCGAT
AGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCGCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGATTAT
GACTGAACGCCTCTAAGTCAGAATCCGGGCTAGAAGCGACGCATGCGCCCGCCGCCCGATTGCCGACCCTCAGTAGGAGCTTCGGCTCCCAAAGGCACGT
GTCGTTGGCTAAGTCCGTTCGGCGGAAGCGCCGTTCGGACCGCCTTGAATCATTATTTCCACCGAGCGGCGGGTAGAATCCTTTGCAGACGACTTAAATA
CGCGACGGGGTATTGTAAGTGGCAGAGTGGCCTTGCTGCCACGATCCACTGAGATTCAGCCCTTTGTCGCTAAGATTCGACCCTCCCCAAACACTCTACA
ATACAAAGAGCCCCAAAGACTTACTTGTAAAACAAACCAAGTCCTCTC