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Detailed information on CNT30311539

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3092943	Camelina sativa	Solanum tuberosum	20.04	5.47	83.64	110	forward

Expression of CNT30311539

Peptides detected in this lncRNA

>peptide 1 (45 aa)
LRLLLLLLLLFLNVFQLWKRKSSSGSHSGSIRRSTFRFNKPPHVP*

>peptide 2 (59 aa)
MSSNCGNERAAPAVTVEALGGLPLDSTSRHMYHDATDLYGRHFSQSCSICDGRGKHGKS*

>peptide 3 (39 aa)
MTLLIYTDAISRKAAPFAMDEANTASRKASAHLSLHQDH*

>peptide 4 (31 aa)
AEAVVAAAVVVLECLPTVETKEQLRQSQWKH*

Sequence

>CNT30311539
GCTGAGGCTGTTGTTGCTGCTGCTGTTGTTGTTCTTGAATGTCTTCCAACTGTGGAAACGAAAGAGCAGCTCCGGCAGTCACAGTGGAAGCATTAGGAGG
TCTACCTTTAGATTCAACAAGCCGCCACATGTACCATGACGCTACTGATCTATACGGACGCCATTTCTCGCAAAGCTGCTCCATTTGCGATGGACGAGGC
AAACACGGCAAGTCGTAAAGCATCTGCACACCTTTCCTTACACCAAGATCATTAACTGGCAACACATCGGGTCTATGAAGAGAGTTTATCATAAACATAT
GAACCGACCATGACCCAATCCCATTCACCATCGTTAGCATCGTGAACAAAGACTTCTCATCCATGTTAACAATTGCAGAATCCGACAAGATCCCGTTTTG
ATATTTCCTAGCAAGATCGTGAAGGTAACTCGCTTTACGCCCTGAAACACCGATTTGACGAAGCCGTTGAGGTGTCAAAGGCAACACATTCTCTGGGACG
ACGCCGTTTTCACCTCCGCACATGTCAACGAAGCGTGTGTAGATTGAGT