Detailed information on CNT30311334


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9M591|CRD1_ARATH, E-value = 3e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30264426Camelina sativaBrassica rapa66.1137.8184.26197forward
CNT30479309Camelina sativaArabidopsis halleri93.2962.0593.88278forward
CNT30115390Camelina sativaEutrema salsugineum44.9724.9188.81134forward

Expression of CNT30311334

Peptides detected in this lncRNA

>peptide 1 (45 aa)
IVIGLELLKQSHELFLVKKRLLNLFLRTLLGLRSGGGRRRRRGSS*

Sequence

>CNT30311334
GATTGTAATCGGTCTTGAACTCTTGAAGCAGAGCCACGAACTCTTCCTGGTTAAGAAGAGACTCCTGAATCTCTTTCTTCGTACCCTTCTTGGACTTCGA
AGTGGCGGTGGTCGGAGGAGGCGGCGAGGAAGTAGCTGACATTCTGATCACGGTGGAGAAACGTCTCCCTGAGAGGTATTTGCTCGGGTTTGAGAGCTTA
GGGGACGTGAATTTGGAGATGGGTTTCACCAACGCCATTTCAGCTGCCATCGATAGTGAGTTGCAGAAGCAAAGAGAGGCCGAGATAGTGAGATAAAG