Detailed information on CNT30311330


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375125Camelina sativaArabidopsis thaliana54.9231.891.72145forward
CNT30236705Camelina sativaBrassica oleracea2514.0190.9166forward
CNT30612587Camelina sativaArabis alpina53.4139.0683.69141forward
CNT30609040Camelina sativaGossypium raimondii37.1221.383.6798forward
CNT30478064Camelina sativaArabidopsis halleri58.3348.7392.86154forward
CNT3037701Camelina sativaCucumis melo20.086.9590.5753forward

Expression of CNT30311330

Peptides detected in this lncRNA

>peptide 1 (51 aa)
QNTGFHNLSFITECFLIHIKAHKVHISTIFTFNYLKGMTISPMLLCHGSAK*

>peptide 2 (40 aa)
MDPPSELRGTQWPRLLAKYPTGPGFPSKWLDPLVMLPIPEP

Sequence

>CNT30311330
CAAAATACAGGTTTTCACAATCTGTCTTTCATTACAGAGTGTTTTTTGATACACATAAAAGCTCATAAGGTACATATTTCAACTATTTTTACATTCAATT
ATTTGAAAGGGATGACAATATCACCAATGTTGTTGTGCCATGGATCCGCCAAGTGAGTTGCGAGGAACTCAATGGCCAAGATTGTTGGCAAAGTACCCCA
CGGGACCGGGTTTCCCAAGTAAGTGGCTTGACCCCCTGGTAATGCTGCCCATTCCTGAGCCTTA