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Detailed information on CNT30311297


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30531232Camelina sativaEucalyptus grandis100.259.5892.622018forward
CNT30550233Camelina sativaIpomoea triloba93.7466.9793.171888forward
CNT30519036Camelina sativaJuglans regia100.4565.4393.772023forward
CNT30619307Camelina sativaSesamum indicum73.198892.131474forward
CNT30283167Camelina sativaChenopodium quinoa100.278.4393.712018forward
CNT3021656Camelina sativaCitrullus lanatus100.433.494.162022forward
CNT30730400Camelina sativaCorchorus capsularis62.9195.5595.661267reverse complement
CNT30632375Camelina sativaVigna unguiculata90.1268.2194.331815forward
CNT30507933Camelina sativaNicotiana attenuata97.1296.2193.971956forward
CNT30711221Camelina sativaGlycine max67.87100.0795.11367forward
CNT3047210Camelina sativaPrunus dulcis90.7156.7994.031827forward
CNT30383474Camelina sativaTriticum turgidum72.9987.1492.181470forward
CNT30545324Camelina sativaBrassica napus86.25100.0695.051737reverse complement
CNT3060563Camelina sativaArabidopsis lyrata99.791.6597.162008reverse complement
CNT3075807Camelina sativaBrassica juncea100.299.1696.132018forward
CNT30217525Camelina sativaKalanchoe fedtschenkoi86.7997.4489.931748forward
CNT30355986Camelina sativaLactuca sativa81.1859.8990.461635forward
CNT30434045Camelina sativaPapaver somniferum10068.5592.22014forward
CNT30574469Camelina sativaVitis vinifera70.6677.6394.171423forward
CNT3023562Camelina sativaPopulus trichocarpa100.3590.5593.422021reverse complement
CNT3035495Camelina sativaCucumis melo97.7237.3693.751968forward
CNT30583181Camelina sativaEchinochloa crusgalli81.3869.9291.71639forward
CNT30335982Camelina sativaCynara cardunculus96.4759.288.471943reverse complement

Expression of CNT30311297

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MRPPPDCRPSVGASAPKGTCRWLSPFGGSAVRTALNHYFHRAAGRILCRRLKYATGYCKWQSGLAATIH*

>peptide 2 (53 aa)
MREIQKRIRLKFRNREVAVDGNVRESGDVGRGLGKSYLFCLTACPPWKWLSRR*

>peptide 3 (55 aa)
MPRHLISDAHEWINEIPTVPVYYPAKPQPRERAWQNQRGKKTLLSLTLVRLCEMT*

>peptide 4 (36 aa)
MERCRQGKSAKWIHNFGKRIGSEGWVRGSQFRTRRL*

>peptide 5 (49 aa)
MAQPEVGSSGWKSTARRVVSSALPAALENPEDRVPLTPGRTHNRIRSPR*

>peptide 6 (34 aa)
MNGLTRFPLSLSTIQRNHSQGNGLGRISGERRPC*

Sequence

>CNT30311297
GTCGGGGCAAGAGCCAGGCCTCGATGAGTAGGAGGGCGCGGCGGTCGCTGTAAAACCTAGGGCGCGAGCCCGGGCGGAGCGGCCGTCGGTGCAGATCTTG
GTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGAGGGGAAAGGTTCCATGTGAACGGCACTTGCACATGGGTTAGTCGATCCTAAGAGTC
GGAGGAAACCCGTCTGATAGCGCTTATGCGCGAAATTCAAAAGAGGATCCGGTTAAAATTCCGGAACCGGGAAGTGGCTGTTGACGGCAACGTTAGGGAG
TCCGGAGACGTCGGCAGGGGCCTTGGGAAGAGTTATCTTTTCTGTTTAACAGCCTGCCCACCCTGGAAATGGCTCAGCCGGAGGTAGGATCCAGCGGCTG
GAAGAGCACCGCACGTCGCGTGGTGTCTAGTGCGCTCCCGGCGGCCCTTGAAAATCCGGAGGACCGAGTGCCACTCACGCCCGGTCGTACTCATAACCGC
ATCAGGTCTCCAAGGTGAACAGCCTCTGGTCGATGGAACGATGTAGACAAGGGAAGTCGGCAAAATGGATCCATAACTTCGGGAAAAGGATTGGCTCTGA
GGGCTGGGTCCGGGGATCCCAGTTCCGAACCCGTCGGCTGTAGGCGAACTGCTCGAGCTGCTTCCACGGCAAGAGCGGGTCGCTGCGTGCTGGCCGGGGG
ACGGATTGGGAACGGTTTCTTCGGGAACTTTCCCCGGGCATCGAACAGTCAGCTCAAAACTGGTACAGACAAGGGGAATCTGACTGTTTAATTAAAAAAG
CATTGCGATGGTCCTTGCGGATGCTAACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGGTAAACGGTGGG
AGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCC
AGCGAAACCACAGCCAAGGGAACGGGCTTGGCAGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAG
GTGTAGGATAAGTGGGAGCTCCGGCGCAATGAAATACCACTACTTTTAACGTTATTTTACTTACTCCGTGAATCGGAGGCGGGGTACAACCCCTGTTTTT
GGTCCCAAGACTCGCTTCGGCGGGTCGATCCGGGCGGAGGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAGGTGT
CCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTCTGATTTTCAGTACGAATACGAACCGTGAAAGCGT
GGCCTATCGATCCTTTAGACCTTCGGAATTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGAC
GTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGG
TTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGCCCGCGTCGCGATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCGCACAATTGG
TCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTAGAAGCGACGCATGC
GCCCGCCGCCCGATTGCCGACCCTCAGTAGGAGCTTCGGCTCCCAAAGGCACGTGTCGTTGGCTAAGTCCGTTCGGCGGAAGCGCCGTTCGGACCGCCTT
GAATCATTATTTCCACCGAGCGGCGGGTAGAATCCTTTGCAGACGACTTAAATACGCGACGGGGTATTGTAAGTGGCAGAGTGGCCTTGCTGCCACGATC
CACTGAGATTCAGC