Detailed information on CNT30311217


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30719706Camelina sativaMalus domestica golden46.6892.1595.131068forward

Expression of CNT30311217

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MRPPPDCRPSVGASAPKGTCRWLSPFGGSAVRTALNHYFHRAAGRILCRRLKYATGYCKWQSGLAATIH*

>peptide 2 (55 aa)
MPRHLISDAHEWINEIPTVPVYYPAKPQPRERAWQNQRGKKTLLSLTLVRLCEMT*

>peptide 3 (55 aa)
MPRHLISDAHEWINEIPTVPVYYPAKPQPRERAWQNQRGKKTLLSLTLVRLCEMT*

>peptide 4 (36 aa)
MERCRQGKSAKWIHNFGKRIGSEGWVRGSQFRTRRL*

>peptide 5 (49 aa)
MAQPEVGSSGWKSTARRVVSSALPAALENPEDRVPLTPGRTHNRIRSPR*

>peptide 6 (34 aa)
MNGLTRFPLSLSTIQRNHSQGNGLGRISGERRPC*

>peptide 7 (34 aa)
MNGLTRFPLSLSTIQRNHSQGNGLGRISGERRPC*

>peptide 8 (53 aa)
MREIQKRIRLKFRNREVAVDGNVRESGDVGRGLGKSYLFCLTACPPWKWLSRR*

Sequence

>CNT30311217
TCGAATTAACTATCCCCGAAAATGGATGGCGCTAAAGAGCGCGACCTATACCAGGCCGTCGGGGCAAGAGCCAGGCCTCGATGAGTAGGAGGGCGCGGCG
CGGCCGTCGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGAGGGGAAAGGTTCCATGTGAACGGCACTTGCACATG
GGTTAGTCGATCCTAAGAGTCGGAGGAAACCCGTCTGATAGCGCTTATGCGCGAAATTCAAAAGAGGATCCGGTTAAAATTCCGGAACCGGGAAGTGGCT
GTTGACGGCAACGTTAGGGAGTCCGGAGACGTCGGCAGGGGCCTTGGGAAGAGTTATCTTTTCTGTTTAACAGCCTGCCCACCCTGGAAATGGCTCAGCC
GGAGGTAGGATCCAGCGGCTGGAAGAGCACCGCACGTCGCGTGGTGTCTAGTGCGCTCCCGGCGGCCCTTGAAAATCCGGAGGACCGAGTGCCACTCACG
CCCGGTCGTACTCATAACCGCATCAGGTCTCCAAGGTGAACAGCCTCTGGTCGATGGAACGATGTAGACAAGGGAAGTCGGCAAAATGGATCCATAACTT
CGGGAAAAGGATTGGCTCTGAGGGCTGGGTCCGGGGATCCCAGTTCCGAACCCGTCGGCTGTAGGCGAACTGCTCGAGCTGCTTCCACGGCAAGAGCGGG
TCGCTGCGTGCTGGCCGGGGGACGGATTGGGAACGGTTTCTTCGGGAACTTTCCCCGGGCATCGAACAGTCAGCTCAAAACTGGTACAGACAAGGGGAAT
CTGACTGTTTAATTAAAAAAGCATTGCGATGGTCCTTGCGGATGCTAACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAAC
CAAGCGCGGGTAAACGGTGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCC
CACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCAGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGA
CTTTGTGAAATGACTTGAGAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCC
AAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGC
TTGGCAGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGAGCTCCGGCGC
AAGTGAAATACCACTACTTTTAACGTTATTTTACTTACTCCGTGAATCGGAGGCGGGGTACAACCCCTGTTTTTGGTCCCAAGACTCGCTTCGGCGGGTC
GATCCGGGCGGAGGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGA
AATCTCGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTCTGATTTTCAGTACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTCGG
AATTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGG
CTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGT
TTTACCCTACTGATGCCCGCGTCGCGATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCGCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT
GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTAGAAGCGACGCATGCGCCCGCCGCCCGATTGCCGACCCTCA
GTAGGAGCTTCGGCTCCCAAAGGCACGTGTCGTTGGCTAAGTCCGTTCGGCGGAAGCGCCGTTCGGACCGCCTTGAATCATTATTTCCACCGAGCGGCGG
GTAGAATCCTTTGCAGACGACTTAAATACGCGACGGGGTATTGTAAGTGGCAGAGTGGCCTTGCTGCCACGATCCACTGAGATTCAGC