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Detailed information on CNT30311205


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3066527Camelina sativaSelaginella moellendorffii71.3296.7782.92808forward

Expression of CNT30311205

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSRVMVLPVKVLTKICIPPRRRSTR*

>peptide 2 (31 aa)
MVSELSTSKVMVLPVRVFTKICIPPRRRSTR*

>peptide 3 (49 aa)
MGLEPPLLIRSQKLRSFHHEDEEPSEELIPSGYCNLQVCDHPRAAFQRR*

>peptide 4 (33 aa)
MKQGTTHKLNQVKRITSQVHGTRTTTFNQITEA*

>peptide 5 (28 aa)
MPSLSWIFALTLSMVSELSTSRVMVLPVS

Sequence

>CNT30311205
TTAGACTTCTAGTTTCTAAGGAAACAGATGATTAACATGCACTTGGATTATTTTTACTGAAAGTTGAAACACAAAGGCCCCTTACGAGCCCAACCAAAAG
GTTCATACGAAAATAAAAGAAAAGCAGAAAAATATGAAACAAGGAACAACACACAAACTAAACCAAGTGAAGAGGATCACCTCCCAAGTGCATGGGACTC
GAACCACCACTTTTAATCAGATCACAGAAGCTTAGAAGCTTCCACCACGAAGACGAAGAACCAAGTGAAGAGTTGATTCCTTCTGGATATTGTAATCTGC
AAGTGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGTCTCTGCTGATCCGGGGGAATTCCCTCCTTGTCTTGGATCTTGGCTTTGACATTGTCA
ATGGTGTCTGAGCTCTCAACCTCGAGGGTGATGGTTTTGCCAGTCAAAGTCTTGACAAAGATCTGCATACCACCACGGAGACGAAGCACAAGGTGAAGTG
TGGACTCCTTTTGGATATTGTAATCTGCAAGTGTGCGACCATCCTCAAGCTGCTTCCCAGCGAAGATGAGTCTCTGCTGATCCGGGGGGATCCCTTCCTT
GTCCTGAATCTTAGCCTTGACGTTATCAATGGTATCTGAGCTCTCCACCTCCAAAGTTATGGTCTTGCCGGTAAGGGTCTTCACAAAGATCTGCATACCA
CCACGTAGACGAAGCACAAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCAAGAGTCCTCCCGTCTTCAAGCTGCTTGCCGGCAAAGATAAGCC
TCTGCTGATCCGGAGGGATTCCTTCCTTATCCTGGATCTTAGCCTTGACGTTGTCAATAGTGTCAGAGCTCTCAACCTCCAAAGTAATAGTCTTGCCGGT
AAGAGTCTTGACAAAGATCTGCATACCACCTCTCAAACGAAGAACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAATCAGCCAAGGTACGGCCATCT
TCAAGCTGTTTACCGGCGAAGATCAATCTCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCGATGGTGTCAGAGCTCT
CAACCTCGAGAGTAATGGTCTTGCCAGTGAGTG