Detailed information on CNT30311191


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30156153Camelina sativaPistacia vera77.1875.1783.6866forward
CNT30410857Camelina sativaPapaver somniferum80.1268.8482.87899forward
CNT30111690Camelina sativaFicus carica78.5279.0182.07881forward

Expression of CNT30311191

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MVLPVRVFTKICIPPRRRSTRWRVDSFWIL*

>peptide 2 (34 aa)
MPSLSWILALTLSMVSELSTSRVMVLPVSVFTKIC

>peptide 3 (30 aa)
MVLPVRVLTKICIPPLRRSTRWRVDSFWIL*

>peptide 4 (71 aa)
MESRLLLDIVVSKSPSVLKLLTSEDKPLLVRWDSLFILNLCFDIVNGVRALNLEGDGFACQRLDKDLHTTS*

>peptide 5 (40 aa)
MVSELSTSRVMVLPVNVLTKICIPPLKRRTKWRVDSFWML*

Sequence

>CNT30311191
GCGGAATGTTTAACATGCACTTGGATTATTAATAAAAGTTGAAATACAAAGGCTCGTTACGAGACCAACCAAAGGTTCATAAGAAAACAGAAAATGAAAC
TTGACAAGGGATATAAGTTTTCGGAAACAGAAACCAGGTGAAGAAGATCACCTCCCAAGTGCATGAGACTCGAACAACCACACTTTTGATCACAGAAAAA
GCTCAGAAGCTTCCACCACGAAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCTGCAAGAGTCCGACCATCCTCAAGCTGTTTCC
CAGCGAAGATGAGTCTCTGTTGGTCTGGTGGGATCCCTTCCTTGTCCTGAATCTTAGCTTTAACGTTATCAATAGTGTCTGAGCTCTCAACTTCCAAAGT
GATGGTCTTACCGGTAAGGGTCTTCACAAAAATCTGCATACCACCACGGAGACGAAGCACAAGATGGAGAGTAGACTCCTTTTGGATATTGTAGTCAGCG
AGGGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGTGGGATTCCCTCTTTATCTTGGATCTTAGCTTTGACATTGTCAA
TAGTATCTGAGCTCTCAACCTCCAAAGTGATGGTTTTACCGGTGAGAGTCTTAACAAAGATTTGCATACCACCTCTCAGACGAAGCACAAGATGGAGAGT
AGACTCCTTTTGGATATTGTAGTCAGCAAGAGTCCTTCCGTCCTCAAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGGTCCGGTGGGATTCCCTCTTTA
TCTTGAATCTTTGCTTTGACATTGTCAATGGTGTCCGAGCTCTCAACCTCGAGGGTGATGGTTTTGCCTGTCAACGTCTTGACAAAGATCTGCATACCAC
CTCTTAAACGAAGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCAGCCAAGGTGCGGCCATCTTCAAGCTGTTTACCGGCAAAGATCAATCT
TTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTAACATTGTCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATGGTCTTACCAGTG
AGTGTTTTCACGAAAATTTGCA