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Detailed information on CNT30311152


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH05|UBI2P_PETCR, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693916Camelina sativaOryza sativa68.3873.8882.591103forward
CNT30532219Camelina sativaEucalyptus grandis83.2679.8581.241343forward
CNT30701438Camelina sativaQuercus lobata77.585.6881.041250forward
CNT30615967Camelina sativaSesamum indicum70.6133.8781.31139forward
CNT30279021Camelina sativaChenopodium quinoa78.5597.1682.081267forward
CNT30525132Camelina sativaPhaseolus vulgaris83.2684.3181.531343forward
CNT30709517Camelina sativaGlycine max56.5498.1784.21912forward
CNT30637282Camelina sativaCapsicum annuum84.7569.4381.351367forward
CNT3097291Camelina sativaSolanum tuberosum84.8788.981.231369forward
CNT30538027Camelina sativaBrassica napus85.7472.9485.471383forward
CNT30511508Camelina sativaSolanum lycopersicum68.9485.0281.651112forward
CNT30171101Camelina sativaTrifolium pratense56.7355.0283.83915forward
CNT3079055Camelina sativaBrassica juncea60.3889.9488.71974forward
CNT30460578Camelina sativaSaccharum spontaneum68.9455.5782.641112forward
CNT30608559Camelina sativaGossypium raimondii70.7474.7781.331141forward
CNT30596296Camelina sativaOryza meridionalis68.3880.183.141103forward
CNT3028051Camelina sativaTheobroma cacao70.4393.1983.271136forward
CNT30326890Camelina sativaAsparagus officinalis56.5473.9184.43912forward
CNT30120444Camelina sativaCitrus clementina68.0768.8481.61098forward
CNT30116770Camelina sativaOryza nivara68.3878.982.51103forward
CNT30174676Camelina sativaVigna angularis54.2581.783.89875forward
CNT30111644Camelina sativaFicus carica68.7577.8282.331109forward
CNT3050995Camelina sativaCucumis sativus66.5896.582.121074forward

Expression of CNT30311152

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSKVMVLPVRVFTKICIPPRRRSTR*

>peptide 2 (31 aa)
MVSELSTSRVMVLPVKVLTKICIPPRRRSTR*

>peptide 3 (49 aa)
MGLEPPLLIRSQKLRSFHHEDEEPSEELIPSGYCNLQVCDHPRAAFQRR*

>peptide 4 (33 aa)
MKQGTTHKLNQVKRITSQVHGTRTTTFNQITEA*

>peptide 5 (36 aa)
MPSLSWIFALTLSMVSELSTSRVMVLPVSVFTKICI*

Sequence

>CNT30311152
TTAGACTTCTAGTTTCTAAGGAAACAGATGATTAACATGCACTTGGATTATTTTTACTGAAAGTTGAAACACAAAGGCCCCTTACGAGCCCAACCAAAAG
GTTCATACGAAAATAAAAGAAAAGCAGAAAAATATGAAACAAGGAACAACACACAAACTAAACCAAGTGAAGAGGATCACCTCCCAAGTGCATGGGACTC
GAACCACCACTTTTAATCAGATCACAGAAGCTTAGAAGCTTCCACCACGAAGACGAAGAACCAAGTGAAGAGTTGATTCCTTCTGGATATTGTAATCTGC
AAGTGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGTCTCTGCTGATCCGGGGGAATTCCCTCCTTGTCTTGGATCTTGGCTTTGACATTGTCA
ATGGTGTCTGAGCTCTCAACCTCGAGGGTGATGGTTTTGCCAGTCAAAGTCTTGACAAAGATCTGCATACCACCACGGAGACGAAGCACAAGGTGAAGGG
TCGACTCCTTTTGGATGTTGTAATCTGCGAGTGTGCGACCATCCTCGAGCTGCTTCCCAGCGAAAATGAGTCTCTGCTGATCCGGAGGGATCCCTTCCTT
GTCCTGAATCTTAGCCTTGACATTATCAATTGTGTCTGAGCTCTCAACCTCCAAGGTAATAGTCTTGCCTGTCAAGGTCTTCACAAATATTTGCATACCA
CCACGTAGACGCAAAACAAGGTGAAGTGTGGACTCCTTTTGGATATTGTAATCTGCAAGTGTGCGACCATCCTCAAGCTGCTTCCCAGCGAAGATGAGTC
TCTGCTGATCCGGGGGGATCCCTTCCTTGTCCTGAATCTTAGCCTTGACGTTATCAATGGTATCTGAGCTCTCCACCTCCAAAGTTATGGTCTTGCCGGT
AAGGGTCTTCACAAAGATCTGCATACCACCACGTAGACGAAGCACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCCGCTAGGGTGCGTCCATCT
TCGAGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGAATCTTGGCTTTGACATTGTCAATTGTGTCTGAGCTCT
CAACCTCGAGGGTGATGGTTTTGCCAGTCAAAGTCTTGACAAAGATTTGCATACCACCACGAAGACGAAGGACAAGGTGAAGGGTCGACTCCTTTTGGAT
GTTGTAATCAGCAAGAGTCCTCCCGTCTTCAAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGATCCGGAGGGATTCCTTCCTTATCCTGGATCTTAGCC
TTGACGTTGTCAATAGTGTCAGAGCTCTCAACCTCCAAAGTAATAGTCTTGCCGGTAAGAGTCTTGACAAAGATCTGCATACCACCTCTCAAACGAAGAA
CCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAATCAGCCAAGGTACGGCCATCTTCAAGCTGTTTACCGGCGAAGATCAATCTCTGCTGGTCCGGAGG
AATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACGAAA
ATTTGCATCTGAG