« Back to Camelina sativa search


Detailed information on CNT30311150


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH32|UBQ4_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641270Camelina sativaNymphaea colorata81.8856.5883.271130forward
CNT30238962Camelina sativaBrassica oleracea65.9447.0888.24910forward
CNT30229606Camelina sativaAnanas comosus65.3668.0883.37902forward
CNT30652285Camelina sativaRosa chinensis66.0174.8685.18911forward
CNT30120688Camelina sativaCitrus clementina64.3581.3282.55888forward
CNT30595410Camelina sativaEragrostis curvula78.8479.7783.271088forward

Expression of CNT30311150

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSKVMVLPVRVFTKICIPPRRRSTR*

>peptide 2 (31 aa)
MVSELSTSRVMVLPVKVLTKICIPPRRRSTR*

>peptide 3 (34 aa)
MPSLSWIFALTLSMVSELSTSRVMVLPVSVFTKIC

>peptide 4 (33 aa)
MKQGTTHKLNQVKRITSQVHGTRTTTFNQITEA*

>peptide 5 (49 aa)
MGLEPPLLIRSQKLRSFHHEDEEPSEELIPSGYCNLQVCDHPRAAFQRR*

Sequence

>CNT30311150
ATTAGACTTCTAGTTTCTAAGGAAACAGATGATTAACATGCACTTGGATTATTTTTACTGAAAGTTGAAACACAAAGGCCCCTTACGAGCCCAACCAAAA
GGTTCATACGAAAATAAAAGAAAAGCAGAAAAATATGAAACAAGGAACAACACACAAACTAAACCAAGTGAAGAGGATCACCTCCCAAGTGCATGGGACT
CGAACCACCACTTTTAATCAGATCACAGAAGCTTAGAAGCTTCCACCACGAAGACGAAGAACCAAGTGAAGAGTTGATTCCTTCTGGATATTGTAATCTG
CAAGTGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGTCTCTGCTGATCCGGGGGAATTCCCTCCTTGTCTTGGATCTTGGCTTTGACATTGTC
AATGGTGTCTGAGCTCTCAACCTCGAGGGTGATGGTTTTGCCAGTCAAAGTCTTGACAAAGATCTGCATACCACCACGGAGACGAAGCACAAGGTGAAGG
GTCGACTCCTTTTGGATGTTGTAATCTGCGAGTGTGCGACCATCCTCGAGCTGCTTCCCAGCGAAAATGAGTCTCTGCTGATCCGGAGGGATCCCTTCCT
TGTCCTGAATCTTAGCCTTGACATTATCAATTGTGTCTGAGCTCTCAACCTCCAAGGTAATAGTCTTGCCTGTCAAGGTCTTCACAAATATTTGCATACC
ACCACGTAGACGCAAAACAAGGTGAAGTGTGGACTCCTTTTGGATATTGTAATCTGCAAGTGTGCGACCATCCTCAAGCTGCTTCCCAGCGAAGATGAGT
CTCTGCTGATCCGGGGGGATCCCTTCCTTGTCCTGAATCTTAGCCTTGACGTTATCAATGGTATCTGAGCTCTCCACCTCCAAAGTTATGGTCTTGCCGG
TAAGGGTCTTCACAAAGATCTGCATACCACCACGTAGACGAAGCACAAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCAAGAGTCCTCCCGTC
TTCAAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGATCCGGAGGGATTCCTTCCTTATCCTGGATCTTAGCCTTGACGTTGTCAATAGTGTCAGAGCTC
TCAACCTCCAAAGTAATAGTCTTGCCGGTAAGAGTCTTGACAAAGATCTGCATACCACCTCTCAAACGAAGAACCAAGTGGAGGGTCGACTCCTTCTGAA
TGTTGTAATCAGCCAAGGTACGGCCATCTTCAAGCTGTTTACCGGCGAAGATCAATCTCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTTGC
CTTGACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCA