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Detailed information on CNT30311148


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH05|UBI2P_PETCR, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30727227Camelina sativaCorchorus capsularis54.159.784.99686forward
CNT3096753Camelina sativaSolanum tuberosum69.478.6482.95880forward

Expression of CNT30311148

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MSLCWSGGIPSLSWILALTLSIVSELSTSKVMVFPVRVFTKICIPPLRRSTKWRVDSFWIL*

>peptide 2 (98 aa)
LKTCTWIIIKLETYTERFTTKVHITKTQNESDREKSFYLLQKSTSKCTSLNQTTPVLTTDHKLRSLHHEDEEPSEESTPSGCCNPQESDHPQAVSQRR*

>peptide 3 (41 aa)
MVSELSTSRVMVLPVSVFTKICICRNKQKQVIDQQNIHQTY*

Sequence

>CNT30311148
TTTTAAAAACGTGCACTTGGATTATTATTAAACTTGAAACATACACCGAAAGGTTTACGACAAAAGTACATATAACTAAAACACAAAATGAAAGCGATAG
AGAAAAGTCTTTTTATCTTTTGCAGAAATCAACTTCCAAGTGCACGAGTCTCAATCAAACAACACCAGTTTTGACTACAGACCATAAGCTCAGAAGTCTC
CACCACGAAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCCGCAAGAGTCCGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAG
TCTCTGTTGGTCCGGAGGGATCCCTTCCTTATCCTGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTCTCTACCTCCAAGGTGATAGTCTTCCCT
GTCAAAGTTTTCACAAAGATTTGCATACCACCACGGAGACGCAACACAAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCCGCAAGGGTGCGTCCAT
CTTCAAGCTGTTTCCCTGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATTCCTTCTTTATCCTGGATCTTAGCCTTGACATTATCGATAGTGTCTGAACT
CTCAACCTCCAAAGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAAATCTGCATACCACCTCTGAGACGAAGCACCAAGTGGAGAGTAGACTCTTTCTGG
ATATTGTAGTCAGCTAGCGTGCGACCATCCTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGAGGAATCCCTTCTTTATCCTGAATCTTAG
CTTTAACATTGTCAATAGTATCCGAACTCTCAACCTCGAGGGTGATGGTTTTGCCAGTCAACGTCTTCACAAAGATTTGCATACCACCTCTTAATCGGAG
AACCAAGTGAAGGGTTGATTCTTTCTGAATGTTGTAATCCGCCAAGGTACGACCATCCTCTAGCTGTTTACCAGCAAAGATCAACCTTTGCTGATCCGGA
GGGATCCCTTCCTTGTCCTGAATCTTAGCCTTAACATTGTCGATGGTGTCAGAACTCTCAACCTCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACGA
AAATTTGCATCTGCAGAAACAAACAAAAACAAGTAATCGATCAGCAAAACATACACCAAACTTATTAAAAAAAACCTAATAAGAAATCAAAAAAACATCG
AAGAGAACGAATCTAGATAAACAAAGAACACAATCAAGAAAACCCTAATAAGAAATCAAAACAACATT