CANTATAdb - search

Detailed information on CNT30311067

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 6e-158

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30728102	Camelina sativa	Corchorus capsularis	52.34	43.86	84.72	661	forward
CNT30630785	Camelina sativa	Vigna unguiculata	53.76	79.6	85.42	679	forward
CNT30506305	Camelina sativa	Nicotiana attenuata	55.34	74.13	85.41	699	forward
CNT30710308	Camelina sativa	Glycine max	53.05	72.51	87.01	670	forward
CNT3044343	Camelina sativa	Prunus dulcis	54.08	77.44	85.21	683	forward
CNT30586586	Camelina sativa	Musa acuminata	54.32	48.24	85.28	686	forward
CNT30541358	Camelina sativa	Brassica napus	54.55	53.04	86.5	689	forward
CNT30229076	Camelina sativa	Ananas comosus	54.47	53.29	85.32	688	forward
CNT3036037	Camelina sativa	Cucumis melo	46	99.83	86.23	581	forward
CNT30111740	Camelina sativa	Ficus carica	54.08	58.78	84.04	683	forward
CNT3066366	Camelina sativa	Selaginella moellendorffii	54.16	81.04	84.5	684	forward
CNT3050758	Camelina sativa	Cucumis sativus	49.09	74.52	85	620	forward

Expression of CNT30311067

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MPSLSWILALTLSMVSELSTSRVIVFPVRVLTKICICNYRTQP*

>peptide 2 (52 aa)
MRRCWSGGIPSLSWILALTLSMVSELSTSSVMVFPVNVLTKICIPPRSLSTK*

>peptide 3 (31 aa)
MVSELSTSRVMVFPVRVFTKICIPPRSLRTR*

Sequence

>CNT30311067
GAGTGTGAATGTCAAGCTTATCTAACAAGCTGTTCTTTTTTTTTGGTCAAAAATAGCAACTAGTTCAGGTTTACCAAACAAATGAAGAACATACATGTAG
AGAAACGAAGATAAAGAGTAGAAATATTTCAATAGAGAAGAAGTTCGATTTGATATCTGAAAGATAAAAAGAAACGGAAACATAGTTCAACAACTAACTT
TATAGTACCCCAAAACACAAAGCACTTAGTTTTTGAGAGGAACTTCTTGTGAAACCACAAGAGACATTTTAGAAACCACCACGGAGACGGAGGACCAAGT
GAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAATGTGCGTCCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATACC
TTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCGAGTGTGATGGTCTTCCCGGTCAATGTCTTGACGAAGATCTGC
ATACCACCACGAAGCCTTAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGACCATCCTCCAACTGCTTTCCGGCGAAGA
TCAACCTCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCCACTTCAAGGGTAATGGTCTT
TCCGGTGAGAGTCTTCACGAAGATTTGCATACCACCACGAAGCCTGAGAACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCCAACGTACGA
CCGTCCTCGAGTTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTAACGTTGTCGATGGTGTCGG
AGCTTTCCACCTCTAGGGTGATTGTCTTTCCTGTAAGAGTCTTAACGAAGATCTGCATCTGTAATTACAGAACACAACCCTAAGATCAATACAAAGATCA
AATCCAAACAAAAATTTCAGATCCGATCAAGAAACTTATACCACATCTATCTTAGAAATCACAGCTCTCAGCGTAAATAAGAAGACTGATATGATAAATC
TAGAATCGGAATCAAAATTTAACTACGAACCCTAATCGAGAATTCAGAGAACAGAGACACAATTCACGAACGTACGAAACAGAAACGAAGAATCAGAATC
TGAAGTTTACCTTTGATTACGAGATTTGAGAGAAGGTTTTGTTTTTAGGTTTTGAAGAAACTG