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Detailed information on CNT30311059


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 6e-158

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30528694Camelina sativaEucalyptus grandis55.1163.1686.49696forward
CNT30510145Camelina sativaSolanum lycopersicum54.5548.3887.52689forward
CNT3077148Camelina sativaBrassica juncea54.4773.988.08688forward
CNT30613113Camelina sativaArabis alpina55.0375.6387.63695forward
CNT30477816Camelina sativaArabidopsis halleri54.7185.5290.01691forward

Expression of CNT30311059

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MRRCWSGGIPSLSWILAFTLSMVSELSTSKVIVFPVRVFTKICIPPRRRNTK*

>peptide 2 (43 aa)
MPSLSWILALTLSMVSELSTSRVIVFPVRVLTKICICNYRTQP*

>peptide 3 (31 aa)
MVSELSTSRVMVFPVRVFTKICIPPRSLRTR*

Sequence

>CNT30311059
GAGTGTGAATGTCAAGCTTATCTAACAAGCTGTTCTTTTTTTTTGGTCAAAAATAGCAACTAGTTCAGGTTTACCAAACAAATGAAGAACATACATGTAG
AGAAACGAAGATAAAGAGTAGAAATATTTCAATAGAGAAGAAGTTCGATTTGATATCTGAAAGATAAAAAGAAACGGAAACATAGTTCAACAACTAACTT
TATAGTACCCCAAAACACAAAGCACTTAGTTTTTGAGAGGAACTTCTTGTGAAACCACAAGAGACATTTTAGAAACCACCACGGAGACGGAGGACCAAGT
GAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAATGTGCGACCATCCTCAAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACC
TTCCTTGTCCTGGATCTTAGCTTTCACGTTGTCGATGGTGTCAGAGCTCTCCACCTCCAAAGTGATTGTCTTCCCGGTAAGAGTCTTCACGAAGATCTGC
ATACCTCCACGGAGACGCAATACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGACCATCCTCCAACTGCTTTCCGGCGAAGA
TCAACCTCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCCACTTCAAGGGTAATGGTCTT
TCCGGTGAGAGTCTTCACGAAGATTTGCATACCACCACGAAGCCTGAGAACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCCAACGTACGA
CCGTCCTCGAGTTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTAACGTTGTCGATGGTGTCGG
AGCTTTCCACCTCTAGGGTGATTGTCTTTCCTGTAAGAGTCTTAACGAAGATCTGCATCTGTAATTACAGAACACAACCCTAAGATCAATACAAAGATCA
AATCCAAACAAAAATTTCAGATCCGATCAAGAAACTTATACCACATCTATCTTAGAAATCACAGCTCTCAGCGTAAATAAGAAGACTGATATGATAAATC
TAGAATCGGAATCAAAATTTAACTACGAACCCTAATCGAGAATTCAGAGAACAGAGACACAATTCACGAACGTACGAAACAGAAACGAAGAATCAGAATC
TGAAGTTTACCTTTGATTACGAGATTTGAGAGAAGGTTTTGTTTTTAGGTTTTGAAGAAACTG