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Detailed information on CNT30311010


BLAST search results

BLAST vs Swiss-Prot:
sp|P69325|UBIQP_SOYBN, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30235198Camelina sativaBrassica oleracea75.5276.1487.68836forward
CNT30426314Camelina sativaPapaver somniferum79.6770.6282.65882forward

Expression of CNT30311010

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MRRCWSGGIPSLSWILAFTLSMVSELSTSSVMVLPVRVLTKICIPPRRRKTK*

>peptide 2 (52 aa)
MRRCWSGGIPSLSWILAFTLSMVSELSTSSVMVFPVRVLTKICIPPRSLSTK*

>peptide 3 (31 aa)
MVSELSTSKVIVFPVKVLTKICIPPRSLRTR*

Sequence

>CNT30311010
GAGGAAACCATCGGAATTTTACTAGACTTAGAAGGATATAATTCCATTAATTCGATTTGTCATTAGAAAGAAAGAAGAGAAATATAAAAAGCCACAAACA
TAGTTCATCAATTATTTATTTTGGGGGCTTTACAAGCGCCCAAAATACACAAGTTTTAAAAGAAACTTTTGAGTAAAACCATAACAGAGTTTAAAAACCA
CCACGGAGACGAAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAATGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGAC
GCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTAGCCTTCACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGTGTGATGGTCTTCCCGGT
CAGAGTCTTGACGAAAATCTGCATACCACCACGAAGCCTTAGCACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGCCAATGTGCGACCATCC
TCAAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGAGGGATACCTTCCTTATCCTGGATTTTAGCCTTCACGTTATCAATGGTGTCGGAGCTCT
CAACCTCCAGTGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATCTGCATACCTCCACGGAGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGAAT
GTTGTAGTCAGCCAAAGTCCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATTAACCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCTTGGATTTTAGCT
TTGACATTGTCGATGGTGTCAGAGCTCTCCACCTCCAAAGTGATAGTCTTTCCCGTCAAAGTCTTGACAAAAATCTGCATACCACCACGGAGCCTGAGAA
CAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCAGCCAAAGTACGGCCATCTTCTAGCTGCTTACCGGCGAAGATAAGCCTTTGCTGATCCGGAGG
GATACCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATTGTGTCAGAGCTTTCCACCTCGAGGGTGATTGTCTTTCCGGTGAGAGTCTTAACAAAG
ATTTGCA