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Detailed information on CNT30310997


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30364222Camelina sativaSorghum bicolor75.0479.9683.37866forward
CNT3026527Camelina sativaPopulus trichocarpa77.992.0283.87899forward
CNT30330420Camelina sativaDioscorea rotundata79.2954.0882.95915forward

Expression of CNT30310997

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MPSLSWIFALTLSMVSELSTSRVMVLPVSVFTKICI*

>peptide 2 (49 aa)
MGLEPPLLIRSQKLRSFHHEDEEPSEELIPSGYCNLQVCDHPRAAFQRR*

>peptide 3 (31 aa)
MVSELSTSRVMVLPVKVLTKICIPPRRRSTR*

>peptide 4 (33 aa)
MKQGTTHKLNQVKRITSQVHGTRTTTFNQITEA*

Sequence

>CNT30310997
GACTTCTAGTTTCTAAGGAAACAGATGATTAACATGCACTTGGATTATTTTTACTGAAAGTTGAAACACAAAGGCCCCTTACGAGCCCAACCAAAAGGTT
CATACGAAAATAAAAGAAAAGCAGAAAAATATGAAACAAGGAACAACACACAAACTAAACCAAGTGAAGAGGATCACCTCCCAAGTGCATGGGACTCGAA
CCACCACTTTTAATCAGATCACAGAAGCTTAGAAGCTTCCACCACGAAGACGAAGAACCAAGTGAAGAGTTGATTCCTTCTGGATATTGTAATCTGCAAG
TGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGTCTCTGCTGATCCGGGGGAATTCCCTCCTTGTCTTGGATCTTGGCTTTGACATTGTCAATG
GTGTCTGAGCTCTCAACCTCGAGGGTGATGGTTTTGCCAGTCAAAGTCTTGACAAAGATCTGCATACCACCACGGAGACGAAGCACAAGGTGAAGGGTGG
ACTCCTTTTGGATGTTGTAATCCGCTAGGGTGCGTCCATCTTCGAGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTC
CTGAATCTTGGCTTTGACATTGTCAATTGTGTCTGAGCTCTCAACCTCGAGGGTGATGGTTTTGCCAGTCAAAGTCTTGACAAAGATTTGCATACCACCA
CGAAGACGAAGGACAAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCAAGAGTCCTCCCGTCTTCAAGCTGCTTGCCGGCAAAGATAAGCCTCT
GCTGATCCGGAGGGATTCCTTCCTTATCCTGGATCTTAGCCTTGACGTTGTCAATAGTGTCAGAGCTCTCAACCTCCAAAGTAATAGTCTTGCCGGTAAG
AGTCTTGACAAAGATCTGCATACCACCTCTCAAACGAAGAACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAATCAGCCAAGGTACGGCCATCTTCA
AGCTGTTTACCGGCGAAGATCAATCTCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCGATGGTGTCAGAGCTCTCAA
CCTCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCATCTGAG