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Detailed information on CNT30310337


BLAST search results

BLAST vs Swiss-Prot:
sp|A4QKM7|RR8_CAPBU, E-value = 3e-86

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693928Camelina sativaOryza sativa20.538.2184.84343forward
CNT30641762Camelina sativaNymphaea colorata20.119.6888.39336forward
CNT30550215Camelina sativaIpomoea triloba24.488.9382.4409forward
CNT30541469Camelina sativaBrassica napus39.8643.5393.84666forward
CNT30237791Camelina sativaBrassica oleracea5.6339.591.4994forward
CNT30555950Camelina sativaOryza glaberrima20.5322.6484.84343forward
CNT30147499Camelina sativaMedicago truncatula19.0320.1886.16318forward
CNT30260256Camelina sativaBrassica rapa4.9128.2895.1282forward
CNT30450248Camelina sativaSaccharum spontaneum4.4336.2786.4974forward
CNT30679488Camelina sativaTriticum urartu8.6224.4586.81144forward
CNT30364284Camelina sativaSorghum bicolor3.2922.0990.9155reverse complement
CNT30434619Camelina sativaPapaver somniferum9.6924.1888.89162forward
CNT30574575Camelina sativaVitis vinifera20.2322.1590.83338forward
CNT3053857Camelina sativaAmborella trichopoda19.2725.6886.02322forward
CNT30576477Camelina sativaOryza barthii6.724.486.61112forward
CNT30585636Camelina sativaEchinochloa crusgalli20.535.9884.84343forward
CNT30116873Camelina sativaOryza nivara8.9221.3885.91149forward

Expression of CNT30310337

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MLSVMLVDPIRTVPFLFMSAFRIEVIISAIVSLPMIS*

>peptide 2 (53 aa)
MTTAALSSYRIIVPLLRLSSLQVRTITALITSDLSRGVFGIASLITATITSPI*

>peptide 3 (32 aa)
IFSFHKKYMDISISCQNRPFFFQLFGRAVSFT*

>peptide 4 (36 aa)
IFFHFTRNIWIYPFHVKTDLFFSSSLDVPFPLREFV*

>peptide 5 (53 aa)
YFFISQEIYGYIHFMSKQTFFFPALWTCRFLYVSSFSKIILVFVYASGWNKLL*

Sequence

>CNT30310337
ATATTTTTTCATTTCACAAGAAATATATGGATATATCCATTTCATGTCAAAACAGACCTTTTTTTTTCCAGCTCTTTGGACGTGCCGTTTCCTTTACGTG
AGTTCGTTTAGTAAGATTATCCTTGTCTTTGTTTATGCCTCGGGTTGGAACAAATTACTATAATTCGTCCCCTCCTGCGGATTAGTCGACACTTTTCACA
AATTTTACGAACGGAAGCCCTTATTTTCATAGTTGTTATTCCTTAATTCTGTGAATATATTTATTGGTGGACGAAAAAAAGGTTTCTTGATATTTTTGAA
TCTTGAATTGTATCTTCGTGAAAGGAATGGTTGAAATTAAAAAAAACCACTTACTCATTTGAATCCTTGTTATGGAGTCTAGAAAATGGCTGTCCCCTGA
TTAATTTATTTATATCTAAGAACTTACTCAAAATTTTACTTTTTTATCCTATTTTTATCCTATAGGTATACCTAAAATATGTCGAATCCTTTCAGAAGCA
TGAAAAAAAATCTTTAGTATCTAAACAAAATCGAAACATGCCGTTCTGAAGTTATTCAGAAAGAAAACTTTCATTAATTCATTTTTTCTTTAATTTCATT
CGAAGTAAAACATCCGAAACTTTTTTGAACAGGGTTTTTATTACGCAACCCCCCCCCCTTTTTTTCACAAATCGTAAATTCCAGATATCTAATTTTTATA
TTAGAAGGATTACCATATATAACACAAAATTTCTCCGCCGATTCTTTTTAGTCGAGCTTCTCGGTCTGTCATTATACCTTGAGAAGTCGAAAGGATTACA
ATCCCTATTCCGCCTAAAATTCGTGGAATTCGTTGAGAGTTAGAATAGATTCGTAGACCCGGTCGACTTATTCTCTTTAAATTTAAAATCGTTTTATAAG
ATTCTTTCTTATTTCGTCTGTGTCTTAGGGTTAAAATCAAAAAATATTGGTTGCTTTCGCGATGTTTCCTCACGTTTTCGATAAAACCCTCTCGTAAAAG
GATTTTAACTATGCTTTCGGTGATGTTAGTCGATCCTATCCGAACCGTACCTTTTCTATTCATGTCAGCATTTCGTATAGAGGTTATTATATCAGCAATA
GTGTCTTTACCCATGATAAGTTAAAATTCCTTCTTGTTCTATAATTTTGATATAATCAACATGTTCTTTTTCTTTTATTTATATATAGATATAGACGAAT
TATATATTAATATATGAATTAAATTCTTAATATTTTATTATTAAGGGTATATGCGTGATACACAATCGATTAATTAATTTTATTTCAATACCAGTTTTTT
AATCCTATACTAAACTATTGATATTTAGATCTTATAATACCTCAGGAGCTAATGAAACTATTTTAGTAAAGTTTAATTGTCTCAATTCCCGTGGGATCGC
CCCAAAAACTCGAGTTCCTTTTGGATTTCCTTCTTGATCAATGACAACTGCGGCATTGTCATCATATCGTATTATCGTCCCATTGTTACGTTTGAGTTCT
TTACAAGTACGTACAATTACAGCTCTAATCACTTCTGATCTTTCTAGAGGAGTATTTGGTATTGCTTCTTTGATTACAGCAACAATAACGTCACCAATAT
GAGCATATCGGCGATTACTAGCTCCTATTATTCGAATACACATCAATTCTCGAGCCCCGCTGTTGTCTGCT