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Detailed information on CNT30309902


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512774Camelina sativaJuglans regia66.8460.7482.85758forward
CNT30224330Camelina sativaHordeum vulgare42.5910082.61483forward
CNT30510528Camelina sativaSolanum lycopersicum72.6663.9881.07824forward
CNT30665536Camelina sativaTriticum dicoccoides34.359.0383.55389forward
CNT30263415Camelina sativaBrassica rapa65.0898.9389.16738forward
CNT30612239Camelina sativaArabis alpina99.8243.1189.581132forward
CNT30448454Camelina sativaSaccharum spontaneum97.0959.7181.471101forward
CNT30716232Camelina sativaMalus domestica golden95.3381.5283.071081forward
CNT30479087Camelina sativaArabidopsis halleri8.9134.7189.11101forward
CNT30361348Camelina sativaSorghum bicolor40.3987.0785.37458forward
CNT30705326Camelina sativaPrunus avium61.0253.8583.67692forward
CNT3054398Camelina sativaAmborella trichopoda19.0531.4982.41216forward
CNT3024028Camelina sativaPopulus trichocarpa31.1347.7782.72353forward

Expression of CNT30309902

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MQSTTTRAPSVIRRAAVTSEEKSTCPGESIRLMRYSFPSLAPVKLFKEASVIS*

>peptide 2 (39 aa)
MVIPRSASSALVSVIRTSPATSWAMIPAAATKESVRVDFP

>peptide 3 (69 aa)
FIPVETLPAKTRPKAKNLPLSEAGIILETYSMRGPLGSQFLMALAYLSSRGPSYRFSTRYLWAVWGDGK*

>peptide 4 (75 aa)
HTSRNLTSKDTTKGKEPTLVRGRNHLRNVQHERTIRVTVPDGISILVIKGAFIQILNTVPLGSVGRWQMKNHHLK*

Sequence

>CNT30309902
TTCATACCAGTAGAAACCTTACCAGCAAAGACACGACCAAAGGCAAAGAACCTACCCTTGTCAGAGGCAGGAATCATCTTAGAAACGTACAGCATGAGAG
GACCATTAGGGTCACAGTTCCTGATGGCATTAGCATACTTGTCATCAAGGGGGCCTTCATACAGATTCTCAACACGGTACCTCTGGGCAGTGTGGGGAGA
TGGCAAATGAAAAATCATCATCTCAAGTAGTGCAGTACTGGCAGGGAGCCACGTCTGCATAACACGCTTCATCAAAGGTTTAGCCAACAGTTCCTTCTCA
TCATTCTTCATCTGGACACCAAGCTTGGCCAACATAGGCCACAACTTGTCCTTCTGGTCATTCATGCAAGTAGCAATGATTTGCTTGATGGGTTCATAGC
AGAACTGCACAAACCCACGCTTGCAGGTCGCGGAACCAGTGTTTTTGCCAGTCCATTTCCTGGTAGCAGGGTCAAAGAAATTTTCACCCCAAAGCCTCTC
CATCATCTTAGACTCATCAACACCGAACTTGGAAGCATACATCTTGGCGAAGTTGGTCAGAGTAAACGCCCAACCGTGGAGACCAGCAGAAAACGCAACA
GTACCCTTCTCTGGATACACCTGAACATCACCAAGGAGAGGATCCTCGTATGTAGCCATGATGACGTTTGCATTCTCAATGACCCTCGAGAAAGTCTGGT
AAGCCTCCTCACCATCAACTTGAAGCTCAAGGAAACACCTGTCCATCTTGTTGACAGTCAAGACGGGTCGAATCCTCTCACCAAGAGCCTGACGTAGAAC
AGTCTCAGTCTGAACACACACACCCTCAATGCAGTCGACCACGACAAGAGCACCATCAGTGATACGGAGAGCAGCAGTAACCTCAGAAGAAAAGTCAACG
TGCCCAGGTGAATCGATAAGGTTGATGAGGTATTCGTTTCCGTCCCTGGCTCCAGTGAAACTCTTCAAAGAAGCATCAGTCATCTCGTAGTAGAGAGAAA
TACCAGTGGACTTGATGGTGATACCACGTTCTGCCTCATCAGCTCTGGTATCAGTCATACGAACATCACCAGCAACCTCTTGGGCAATGATACCAGCAGC
AGCAACCAAGGAATCAGTGAGAGTGGATTTCCCT