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Detailed information on CNT30309889


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30192963Camelina sativaSecale cereale25.2546.4482.66248forward
CNT30441049Camelina sativaAegilops tauschii34.9390.7483.97343forward
CNT30722731Camelina sativaTriticum spelta10.5920.3582.69104forward
CNT30119815Camelina sativaCitrus clementina31.6767.7681.35311forward

Expression of CNT30309889

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MQSTTTRAPSVIRRAAVTSEEKSTCPGESIRLMRYSFPSLAPVKLFKEASVIS*

>peptide 2 (33 aa)
TDSQHGTSGQCGEMANEKSSSQVVQYWQGATSA*

Sequence

>CNT30309889
ACAGATTCTCAACACGGTACCTCTGGGCAGTGTGGGGAGATGGCAAATGAAAAATCATCATCTCAAGTAGTGCAGTACTGGCAGGGAGCCACGTCTGCAT
AACACGCTTCATCAAAGGTTTAGCCAACAGTTCCTTCTCATCATTCTTCATCTGGACACCAAGCTTGGCCAACATAGGCCACAACTTGTCCTTCTGGTCA
TTCATGCAAGTAGCAATGATTTGCTTGATGGGTTCATAGCAGAACTGCACAAACCCACGCTTGCAGGTCGCGGAACCAGTGTTTTTGCCAGTCCATTTCC
TGGTAGCAGGGTCAAAGAAATTTTCACCCCAAAGCCTCTCCATCATCTTAGACTCATCAACACCGAACTTGGAAGCATACATCTTGGCGAAGTTGGTCAG
AGTAAACGCCCAACCGTGGAGACCAGCAGAAAACGCAACAGTACCCTTCTCTGGATACACCTGAACATCACCAAGGAGAGGATCCTCGTATGTAGCCATG
ATGACGTTTGCATTCTCAATGACCCTCGAGAAAGTCTGGTAAGCCTCCTCACCATCAACTTGAAGCTCAAGGAAACACCTGTCCATCTTGTTGACAGTCA
AGACGGGTCGAATCCTCTCACCAAGAGCCTGACGTAAGACAGTCTCAGTCTGAACGCAGACACCCTCAATGCAGTCGACCACGACAAGAGCACCATCAGT
GATACGGAGAGCAGCAGTAACCTCAGAAGAAAAGTCAACGTGCCCAGGTGAATCGATAAGGTTGATGAGGTATTCGTTTCCGTCTCTGGCTCCAGTGAAA
CTCTTCAAAGAAGCATCAGTCATCTCGTAGTAGAGAGAAATACCAGTGGACTTGATAGTGATACCACGTTCTGCCTCATCAGCTCTGGTATCAGTCATAC
GAACATCACCAGCAACCTCTTGGGCAATGATACCAGCAGCAGCAACCAAGGAATCAGTGAGAGTGGATTTCCCTGTTGAAAT