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Detailed information on CNT30309861


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2Z2F6|H3L3_LILLO, E-value = 9e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315797Camelina sativaCorylus avellana27.125.4282.14168forward
CNT30547549Camelina sativaIpomoea triloba27.5822.0981.29171forward
CNT30698329Camelina sativaQuercus lobata29.8439.1987.57185forward
CNT30274756Camelina sativaChenopodium quinoa29.8417.1682.16185forward
CNT3069241Camelina sativaQuercus suber29.8442.0587.57185forward
CNT30380641Camelina sativaManihot esculenta29.0326.0584.44180forward
CNT30200890Camelina sativaPisum sativum29.8430.0885.41185forward
CNT30709007Camelina sativaGlycine max29.6877.3182.61184forward
CNT3048083Camelina sativaPrunus dulcis29.5226.0784.15183forward
CNT3090157Camelina sativaSolanum tuberosum20.812082.95129forward
CNT30283601Camelina sativaTriticum aestivum27.4226.3680170forward
CNT30398097Camelina sativaTriticum turgidum29.5223.9279.23183forward
CNT30565750Camelina sativaActinidia chinensis27.7415.6584.3172forward
CNT3084175Camelina sativaVigna radiata29.8417.7581.62185forward
CNT30508643Camelina sativaSolanum lycopersicum27.7422.3781.4172forward
CNT30435418Camelina sativaAegilops tauschii16.7724.1981.73104forward
CNT30240569Camelina sativaAvena sativa27.4226.3280.59170forward
CNT30259840Camelina sativaBrassica rapa29.8464.0186.49185forward
CNT30613891Camelina sativaArabis alpina25.1638.7189.1156forward
CNT30141394Camelina sativaLolium perenne27.4226.5279.41170forward
CNT30610039Camelina sativaGossypium raimondii29.3520.6885.16182forward
CNT30720053Camelina sativaTriticum spelta27.4257.8280170forward
CNT30477972Camelina sativaArabidopsis halleri28.8751.7386.59179forward
CNT30368649Camelina sativaSorghum bicolor27.4240.4879.41170forward
CNT30358481Camelina sativaLactuca sativa29.6820.0988.59184forward
CNT30414942Camelina sativaPapaver somniferum29.6822.6386.41184forward
CNT30644610Camelina sativaCannabis sativa25.1633.9188.46156forward
CNT3053477Camelina sativaAmborella trichopoda29.5229.2381.42183forward
CNT3051266Camelina sativaCucumis sativus29.8424.6783.78185forward

Expression of CNT30309861

Peptides detected in this lncRNA

>peptide 1 (65 aa)
SSVLFWYFLISLRATVPGLNLCGFFTPPVAGADFLAAFVASCFLGALPPVDFLAVCLVRAILLQN*

>peptide 2 (36 aa)
MFESAGGFENIRFLATSQIHGDDINSMASCIMEDYY*

>peptide 3 (32 aa)
KLGTLLVLPDLSQSDGSRSESVWLLHSSGGWS*

Sequence

>CNT30309861
GAAGCTCGGTACTCTTCTGGTACTTCCTGATCTCTCTCAGAGCGACGGTTCCAGGTCTGAATCTGTGTGGCTTCTTCACTCCTCCGGTGGCTGGAGCTGA
TTTCCTCGCAGCTTTTGTCGCCAGCTGCTTCCTTGGAGCTTTGCCTCCGGTTGATTTCCTAGCCGTCTGCTTAGTACGAGCCATTCTTTTGCAAAACTGA
CAGATTGTTATGCATACTCATGTTCTGATTGATGATGGATTCCTGCCGGTTCTGAGGATAATATTGTCAATAAGCTAACTTCCACGGAGTGACAAGGTCA
ATGGAGGGTGTGTAATTGAATTAGGTTTGATGAACCAGGTTTCTTGCTAAAGAAGGTTGTATTGAGGTTCTCACATGTGAGGATGTTGCAATTGTTAAAG
CATCACTAAAAACCATAGGGGATCCATGTAGAAGATCACTTTCCATACAAGACAATGTTTGAGAGTGCTGGGGGTTTCGAGAACATCAGGTTTCTTGCTA
CGTCTCAGATCCATGGTGATGATATAAACTCCATGGCTTCATGTATCATGGAAGATTATTATTGATATAAACAGAGAAACAAATTTATTTCAATATCAAG
TTCAATTACATTGATTACTA