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Detailed information on CNT30309793


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 3e-127

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532226Camelina sativaEucalyptus grandis43.9647.379.53342forward
CNT30547527Camelina sativaIpomoea triloba37.6667.6780.89293forward
CNT30512729Camelina sativaJuglans regia75.1956.8579.66585forward
CNT30371838Camelina sativaArabidopsis thaliana75.7144.6691.68589forward
CNT30405820Camelina sativaBeta vulgaris19.9229.383.23155forward
CNT3045373Camelina sativaPrunus dulcis58.6158.1680.92456forward
CNT30191304Camelina sativaSecale cereale49.3629.5284.38384forward
CNT30300473Camelina sativaTriticum aestivum52.0641.8484.2405forward
CNT30224354Camelina sativaHordeum vulgare47.8171.6884.41372forward
CNT3085191Camelina sativaVigna radiata35.638.6380.51277forward
CNT30510505Camelina sativaSolanum lycopersicum63.1145.2182.08491forward
CNT30441158Camelina sativaAegilops tauschii52.0653.3684.2405forward
CNT30684236Camelina sativaTriticum urartu43.324183.98337forward
CNT30345702Camelina sativaEragrostis tef55.5353.4781.02432forward
CNT30596122Camelina sativaOryza meridionalis35.2239.683.58274forward
CNT30153558Camelina sativaPrunus persica22.2451.1881.5173forward
CNT30332479Camelina sativaDioscorea rotundata16.244.5283.33126forward
CNT30575986Camelina sativaOryza barthii49.132.3582.72382forward
CNT3051057Camelina sativaCucumis sativus7.9727.0788.7162forward

Expression of CNT30309793

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MPLMFSSQRGPSLEAHWKPATTESLISLRY*

>peptide 2 (35 aa)
FANTITKFSTRKSRTLRGWREKSLHNPSFQKRVVS*

>peptide 3 (29 aa)
MAREKSSQSIISKESSLIKHDKNKDKREL*

Sequence

>CNT30309793
ATTTGCGAACACAATAACAAAGTTCTCAACAAGAAAAAGTAGAACATTGAGGGGATGGCGAGAGAAAAGTCTTCACAATCCATCATTTCAAAAGAGAGTA
GTCTCATAAAACACGACAAAAATAAGGATAAGAGAGAGTTGTGACCATACTGAAAGAGGCAGCTAAGTCTTTGGTGAAGCTTCTTAAAGCTTGTCTTCGA
AATCAGATAGTGGAGTCATCTGTTCCTTCAAACCCTTCCTCTTCCTGATTTCAGCCACCAGAACTGAAGCCTGAGTTCCTGCATCAAGAGGGTCAGAAGG
CATCATCTCCCAATGATCAAACACAGACTGCGGGAATGCCTGTCCTGAGGTTGCTGCCCTAAGCTGAGCCGAGAATCCAAACGACTCCACAACAGGCAGG
TACGCCTTGATGTTGTACAGTGGTGTCCCTGGCCTCTGCATCTCCTCAAAGACGTGTCCTCTCTTCTGATTCAGCACGCTGTAGATTCCTCCAAGAGCTC
CCTCTGGTGCCTGGATCTCAACCATGTATACAGGCTCCAAAAGTCGGGGCTTGGCAGTGAGCTGGGAAGCGTATATGACTCTTCTGGCTGTTGGGATGAC
CTGACCACCTCCTCTGTGGATCGCATCAGAGTGAAGAACCACATCACAAACCTCAAAACAGATGCCTCTCATGTTCTCTTCGCAAAGAGGACCTTCCTTG
GAAGCCCACTGGAAACCAGCCACCACTGAGTCCTTGATTTCATTAAGGTACTGAACTCCCTTACACATATCAACCACC