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Detailed information on CNT30309702


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315343Camelina sativaCorylus avellana13.2430.2185.27129forward
CNT30372926Camelina sativaArabidopsis thaliana8.9322.6697.787reverse complement
CNT30164954Camelina sativaPistacia vera7.2923.285.9271forward
CNT30540426Camelina sativaBrassica napus25.9840.3590.12253forward
CNT30236524Camelina sativaBrassica oleracea18.5827.9393.37181forward
CNT30508717Camelina sativaSolanum lycopersicum9.8644.8682.2996forward
CNT3060956Camelina sativaArabidopsis lyrata18.4821.8286.67180forward
CNT3077592Camelina sativaBrassica juncea26.1834.9388.63255forward
CNT30264014Camelina sativaBrassica rapa25.9834.3890.12253forward
CNT30611294Camelina sativaArabis alpina23.5113.8889.96229forward
CNT30601253Camelina sativaFraxinus excelsior8.9337.8387.3687forward

Expression of CNT30309702

Peptides detected in this lncRNA

>peptide 1 (80 aa)
FLQSTHARVDWRKNNFYCQPGWLVPQTDIESKPVTQTFPALTSPSNLFLLSDFNIQNLNLRLFHSYRSRAGTCWCFVFTG*

>peptide 2 (56 aa)
MNWVQRKIYLYNVTFGLYMLDWWERYLFNSLVVVLMWFVIYNGTRYFSELYQRHLT*

>peptide 3 (53 aa)
MHVWFQFLRYIPTKTSFSSVTSDFVNFPPKALGLFVCLCIICSHVFEINRAYL*

>peptide 4 (31 aa)
MKSLEPPQRHARLVSISEIYTNKNLLFQRHL*

Sequence

>CNT30309702
TTCTTACAAAGCACACACGCGCGTGTGGATTGGAGAAAAAACAATTTCTATTGTCAACCCGGTTGGTTAGTTCCACAAACCGATATTGAATCTAAACCGG
TCACACAGACTTTTCCAGCTTTGACGTCTCCGTCCAATTTGTTTCTTCTGTCTGATTTTAACATTCAAAATCTGAACTTGAGATTATTCCATTCCTATAG
ATCGAGAGCAGGAACGTGCTGGTGCTTTGTTTTTACCGGGTAAATTTTGAAACTTGGATCGGGTGTTCCCAGATTTGGTAGTCTCGAACGCTTCTTACTG
GTGGCCTGGAATCGATCAGATATGAACTGGGTTCAACGCAAAATCTACCTTTACAATGTCACCTTCGGGCTCTACATGCTTGATTGGTGGGAACGATACC
TCTTCAATTCTTTGGTGGTAGTCTTGATGTGGTTCGTTATATACAACGGTACACGCTACTTTTCGGAGCTCTACCAGAGGCATTTGACATGAAAACAGGT
CTTATTTCTCGCACGGTAGAGCATGAAAAGCCTGGAACCTCCCCAAAGGCATGCACGTTTGGTTTCAATTTCTGAGATATATACCAACAAAAACCTCCTT
TTCCAGCGTCACCTCTGATTTTGTCAATTTTCCTCCAAAGGCTCTAGGACTATTCGTATGTCTCTGTATCATTTGTTCCCATGTTTTCGAAATCAACAGA
GCTTATTTATAGACACATAAGATCGCAAGTCTTTCTGTTGTATTTCCAAATCACTTTGATAAAATGACCAAAGCAATACTACATTATTGGTTTCTTGTCC
TATGACCCAGTGAATACTATTACAACATTACAGAAAGGTCTTCATCCTTTCGATTACAACAAATATTGTACTGTATATAGTTGCAGGCTTTAAAGAACTT
GCGCATTACAGCATATAACAGAGCATGATTTTAAGAGGGAAACTCTGTTCTAAACATATTAAAACGAAATTTAG